miRNA display CGI


Results 21 - 40 of 116 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24100 5' -56.5 NC_005262.1 + 56758 0.66 0.653508
Target:  5'- -cGCugGCGUcGG-GCGA--CGAGCGc -3'
miRNA:   3'- guCGugCGCGuCCuCGCUuuGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 19301 0.66 0.653508
Target:  5'- gCAGCcgACGUGCuc-GGCGAuGCGAGUGa -3'
miRNA:   3'- -GUCG--UGCGCGuccUCGCUuUGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 13796 0.66 0.653508
Target:  5'- gGGCGCcgGCGCGGcuucaucGGCgGGAGCGGGCGc -3'
miRNA:   3'- gUCGUG--CGCGUCc------UCG-CUUUGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 61790 0.67 0.642677
Target:  5'- gCAGCGCcgugGCGU-GGAGCau-GCGAGCa -3'
miRNA:   3'- -GUCGUG----CGCGuCCUCGcuuUGCUCGc -5'
24100 5' -56.5 NC_005262.1 + 41546 0.67 0.642677
Target:  5'- aCGGCgugAUGCGCAGGccGGCcGGcgUGGGCGg -3'
miRNA:   3'- -GUCG---UGCGCGUCC--UCG-CUuuGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 45067 0.67 0.642677
Target:  5'- gAGC-CGCGCcgaagcugAGGAGCGccuuGACGccuGGCGg -3'
miRNA:   3'- gUCGuGCGCG--------UCCUCGCu---UUGC---UCGC- -5'
24100 5' -56.5 NC_005262.1 + 48453 0.67 0.642677
Target:  5'- -cGCGCGCGUAugccgcgcGGAucGCGAGccgcgugggcACGGGCGg -3'
miRNA:   3'- guCGUGCGCGU--------CCU--CGCUU----------UGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 20596 0.67 0.642677
Target:  5'- gCGGCGCGcCGCAGG-GCuGuuGCGuAGCc -3'
miRNA:   3'- -GUCGUGC-GCGUCCuCG-CuuUGC-UCGc -5'
24100 5' -56.5 NC_005262.1 + 17245 0.67 0.631837
Target:  5'- -uGgGCGuCGCGGGAGCGGcGGCcGGCGc -3'
miRNA:   3'- guCgUGC-GCGUCCUCGCU-UUGcUCGC- -5'
24100 5' -56.5 NC_005262.1 + 52545 0.67 0.631837
Target:  5'- -cGCugGCGCAGGcGaugGAAACGAuCGa -3'
miRNA:   3'- guCGugCGCGUCCuCg--CUUUGCUcGC- -5'
24100 5' -56.5 NC_005262.1 + 10978 0.67 0.631837
Target:  5'- uCGGCGCGC-CGGGAacgccggucGCGcucgcacggcuGACGAGCGa -3'
miRNA:   3'- -GUCGUGCGcGUCCU---------CGCu----------UUGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 45650 0.67 0.631837
Target:  5'- gGGCACGCGCucccGGu-UGAGGCGcAGCGc -3'
miRNA:   3'- gUCGUGCGCGu---CCucGCUUUGC-UCGC- -5'
24100 5' -56.5 NC_005262.1 + 49548 0.67 0.620997
Target:  5'- gAGCGCGCuccaGCAGGucGCGcaGAACGAGg- -3'
miRNA:   3'- gUCGUGCG----CGUCCu-CGC--UUUGCUCgc -5'
24100 5' -56.5 NC_005262.1 + 40849 0.67 0.620997
Target:  5'- gCAGCAucacgccucccuCGCGCGGaGcauGGCGucGGCGAGCGc -3'
miRNA:   3'- -GUCGU------------GCGCGUC-C---UCGCu-UUGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 54126 0.67 0.610167
Target:  5'- aCGGUguuUGCGCAGGAGCG--GC-AGCGc -3'
miRNA:   3'- -GUCGu--GCGCGUCCUCGCuuUGcUCGC- -5'
24100 5' -56.5 NC_005262.1 + 12655 0.67 0.599355
Target:  5'- aAGCGCGCGC-GGcGCGcgGCGAacccuGCGc -3'
miRNA:   3'- gUCGUGCGCGuCCuCGCuuUGCU-----CGC- -5'
24100 5' -56.5 NC_005262.1 + 28402 0.67 0.599355
Target:  5'- gAGCguGCGCGCGGuauuGAGCGccGCGuGCGc -3'
miRNA:   3'- gUCG--UGCGCGUC----CUCGCuuUGCuCGC- -5'
24100 5' -56.5 NC_005262.1 + 15729 0.67 0.599355
Target:  5'- gCGGCucguCGCgGCAGGuGCGAccgacgcgcuuGCGGGCGc -3'
miRNA:   3'- -GUCGu---GCG-CGUCCuCGCUu----------UGCUCGC- -5'
24100 5' -56.5 NC_005262.1 + 8846 0.67 0.599355
Target:  5'- uGGUuuuCGCGCAGGu-UGAAGCGcAGCGa -3'
miRNA:   3'- gUCGu--GCGCGUCCucGCUUUGC-UCGC- -5'
24100 5' -56.5 NC_005262.1 + 36472 0.67 0.599355
Target:  5'- gGGCGCGCGCgAGGcuGGCGGAcaucGCGAa-- -3'
miRNA:   3'- gUCGUGCGCG-UCC--UCGCUU----UGCUcgc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.