miRNA display CGI


Results 41 - 60 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24101 3' -51.8 NC_005262.1 + 50830 0.66 0.911301
Target:  5'- gGUCGUCGaCGccGAGccgGUCGGCGAUGCc -3'
miRNA:   3'- -UAGUAGC-GU--UUCaugCGGCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 54798 0.66 0.911301
Target:  5'- -aCGUCGCGcagAAGaUGCGCgCGGCGuuuaGCc -3'
miRNA:   3'- uaGUAGCGU---UUC-AUGCG-GCCGUug--CG- -5'
24101 3' -51.8 NC_005262.1 + 41674 0.66 0.911301
Target:  5'- cGUCAUCGC------CGCCGGCAcCGg -3'
miRNA:   3'- -UAGUAGCGuuucauGCGGCCGUuGCg -5'
24101 3' -51.8 NC_005262.1 + 54172 0.66 0.911301
Target:  5'- --gAUCGUcAAG-GCGCCGGUccuguccgAGCGCg -3'
miRNA:   3'- uagUAGCGuUUCaUGCGGCCG--------UUGCG- -5'
24101 3' -51.8 NC_005262.1 + 47916 0.66 0.911301
Target:  5'- uGUUuUUGCAGAcgccGaGCGCCGGCGACa- -3'
miRNA:   3'- -UAGuAGCGUUU----CaUGCGGCCGUUGcg -5'
24101 3' -51.8 NC_005262.1 + 32425 0.66 0.904589
Target:  5'- -cCAUCGCugccGGUuucauCGCCGGCAugaagaaggcuCGCu -3'
miRNA:   3'- uaGUAGCGuu--UCAu----GCGGCCGUu----------GCG- -5'
24101 3' -51.8 NC_005262.1 + 46747 0.66 0.904589
Target:  5'- gAUCgAUCGCcgccacgccgGucGUACaGgCGGCGACGCg -3'
miRNA:   3'- -UAG-UAGCG----------UuuCAUG-CgGCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 45780 0.66 0.904589
Target:  5'- -gCAUCGCGgcGaAgGgCGGCGGCGUg -3'
miRNA:   3'- uaGUAGCGUuuCaUgCgGCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 25536 0.66 0.904589
Target:  5'- -gCGUCGCGAcguccGUGCGC-GGCGGCa- -3'
miRNA:   3'- uaGUAGCGUUu----CAUGCGgCCGUUGcg -5'
24101 3' -51.8 NC_005262.1 + 38832 0.67 0.866877
Target:  5'- cGUC-UCGCGugcucAGGaAgGCaCGGCAGCGCu -3'
miRNA:   3'- -UAGuAGCGU-----UUCaUgCG-GCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 17454 0.67 0.861906
Target:  5'- gAUCAcguucgaggacuUCGCcGAGUuccaggacgaagcgcGCGCCGcgcGCGACGCg -3'
miRNA:   3'- -UAGU------------AGCGuUUCA---------------UGCGGC---CGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 30142 0.67 0.857696
Target:  5'- cUgGUCGcCGAA--GCGCCGGCGgaugccgACGCg -3'
miRNA:   3'- uAgUAGC-GUUUcaUGCGGCCGU-------UGCG- -5'
24101 3' -51.8 NC_005262.1 + 17059 0.67 0.855994
Target:  5'- cUCGUCGCGcgcacggcgccgauAGGcGCGCCcGuCGACGCg -3'
miRNA:   3'- uAGUAGCGU--------------UUCaUGCGGcC-GUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 35842 0.67 0.853423
Target:  5'- cGUCGgcgcCGCGAccgcccagauguuuGUGCG-CGGCGACGCg -3'
miRNA:   3'- -UAGUa---GCGUUu-------------CAUGCgGCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 29205 0.67 0.849962
Target:  5'- gGUCAUCgGCAAGaUGcCGCCGGagauCGCg -3'
miRNA:   3'- -UAGUAG-CGUUUcAU-GCGGCCguu-GCG- -5'
24101 3' -51.8 NC_005262.1 + 45692 0.67 0.849962
Target:  5'- uUCGUgCGCAucGaGgGCCGGCAGCcgGCc -3'
miRNA:   3'- uAGUA-GCGUuuCaUgCGGCCGUUG--CG- -5'
24101 3' -51.8 NC_005262.1 + 6439 0.67 0.847341
Target:  5'- cGUCcuUCGUguAGUucggcuccggcgagACGCCGGCAucgACGCg -3'
miRNA:   3'- -UAGu-AGCGuuUCA--------------UGCGGCCGU---UGCG- -5'
24101 3' -51.8 NC_005262.1 + 48472 0.67 0.841142
Target:  5'- --gAUCGCGAGccgcGUGgGCacgGGCGGCGCg -3'
miRNA:   3'- uagUAGCGUUU----CAUgCGg--CCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 31706 0.67 0.838451
Target:  5'- -gCAUCGaCcAAGUGCgucacucgguuucgGCCGGCGGuCGCa -3'
miRNA:   3'- uaGUAGC-GuUUCAUG--------------CGGCCGUU-GCG- -5'
24101 3' -51.8 NC_005262.1 + 55053 0.67 0.866877
Target:  5'- gAUgAUCGCGAcgggcauggaGGaGCGCCGGCuGgGCc -3'
miRNA:   3'- -UAgUAGCGUU----------UCaUGCGGCCGuUgCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.