miRNA display CGI


Results 61 - 80 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24101 3' -51.8 NC_005262.1 + 8847 0.67 0.855994
Target:  5'- gGUUuUCGCGcAGGUugaagcgcagcgacACGcCCGGCAGCGUc -3'
miRNA:   3'- -UAGuAGCGU-UUCA--------------UGC-GGCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 55053 0.67 0.866877
Target:  5'- gAUgAUCGCGAcgggcauggaGGaGCGCCGGCuGgGCc -3'
miRNA:   3'- -UAgUAGCGUU----------UCaUGCGGCCGuUgCG- -5'
24101 3' -51.8 NC_005262.1 + 61700 0.67 0.866877
Target:  5'- gAUCAgggCGCGccGGGUuCGCuCGGC-GCGCu -3'
miRNA:   3'- -UAGUa--GCGU--UUCAuGCG-GCCGuUGCG- -5'
24101 3' -51.8 NC_005262.1 + 31706 0.67 0.838451
Target:  5'- -gCAUCGaCcAAGUGCgucacucgguuucgGCCGGCGGuCGCa -3'
miRNA:   3'- uaGUAGC-GuUUCAUG--------------CGGCCGUU-GCG- -5'
24101 3' -51.8 NC_005262.1 + 48472 0.67 0.841142
Target:  5'- --gAUCGCGAGccgcGUGgGCacgGGCGGCGCg -3'
miRNA:   3'- uagUAGCGUUU----CAUgCGg--CCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 6439 0.67 0.847341
Target:  5'- cGUCcuUCGUguAGUucggcuccggcgagACGCCGGCAucgACGCg -3'
miRNA:   3'- -UAGu-AGCGuuUCA--------------UGCGGCCGU---UGCG- -5'
24101 3' -51.8 NC_005262.1 + 29029 0.67 0.832093
Target:  5'- gAUCcgCcgaGCucGAGcgGCGCCGGCAcgACGCg -3'
miRNA:   3'- -UAGuaG---CGu-UUCa-UGCGGCCGU--UGCG- -5'
24101 3' -51.8 NC_005262.1 + 29205 0.67 0.849962
Target:  5'- gGUCAUCgGCAAGaUGcCGCCGGagauCGCg -3'
miRNA:   3'- -UAGUAG-CGUUUcAU-GCGGCCguu-GCG- -5'
24101 3' -51.8 NC_005262.1 + 35842 0.67 0.853423
Target:  5'- cGUCGgcgcCGCGAccgcccagauguuuGUGCG-CGGCGACGCg -3'
miRNA:   3'- -UAGUa---GCGUUu-------------CAUGCgGCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 17059 0.67 0.855994
Target:  5'- cUCGUCGCGcgcacggcgccgauAGGcGCGCCcGuCGACGCg -3'
miRNA:   3'- uAGUAGCGU--------------UUCaUGCGGcC-GUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 30142 0.67 0.857696
Target:  5'- cUgGUCGcCGAA--GCGCCGGCGgaugccgACGCg -3'
miRNA:   3'- uAgUAGC-GUUUcaUGCGGCCGU-------UGCG- -5'
24101 3' -51.8 NC_005262.1 + 17454 0.67 0.861906
Target:  5'- gAUCAcguucgaggacuUCGCcGAGUuccaggacgaagcgcGCGCCGcgcGCGACGCg -3'
miRNA:   3'- -UAGU------------AGCGuUUCA---------------UGCGGC---CGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 38832 0.67 0.866877
Target:  5'- cGUC-UCGCGugcucAGGaAgGCaCGGCAGCGCu -3'
miRNA:   3'- -UAGuAGCGU-----UUCaUgCG-GCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 12467 0.68 0.813347
Target:  5'- -aCGUCGCucacGGgGCGCCGcGCGgcauACGCa -3'
miRNA:   3'- uaGUAGCGuu--UCaUGCGGC-CGU----UGCG- -5'
24101 3' -51.8 NC_005262.1 + 39190 0.68 0.813347
Target:  5'- -aUAUCGUcuGGgAUGCCGGCAACu- -3'
miRNA:   3'- uaGUAGCGuuUCaUGCGGCCGUUGcg -5'
24101 3' -51.8 NC_005262.1 + 24802 0.68 0.821886
Target:  5'- -aCAUCGCGAAGggcaaGCGCgagcucgcgaucgCGGcCGGCGCc -3'
miRNA:   3'- uaGUAGCGUUUCa----UGCG-------------GCC-GUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 58857 0.68 0.822825
Target:  5'- --gAUCgGCGAcGUcACGCCGGCGcagcccGCGCg -3'
miRNA:   3'- uagUAG-CGUUuCA-UGCGGCCGU------UGCG- -5'
24101 3' -51.8 NC_005262.1 + 15158 0.68 0.822825
Target:  5'- aGUCggCGCGGAuGUugGaCGGCAcgcaGCGCu -3'
miRNA:   3'- -UAGuaGCGUUU-CAugCgGCCGU----UGCG- -5'
24101 3' -51.8 NC_005262.1 + 31557 0.68 0.817162
Target:  5'- cGUCAUccagCGCAAGaccgagcucgaauccG-ACGCCGGCGAuCGCa -3'
miRNA:   3'- -UAGUA----GCGUUU---------------CaUGCGGCCGUU-GCG- -5'
24101 3' -51.8 NC_005262.1 + 60488 0.68 0.813347
Target:  5'- gAUCAggGCGAG--ACGCCGgGCcGCGCg -3'
miRNA:   3'- -UAGUagCGUUUcaUGCGGC-CGuUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.