Results 81 - 100 of 174 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24101 | 3' | -51.8 | NC_005262.1 | + | 15158 | 0.68 | 0.822825 |
Target: 5'- aGUCggCGCGGAuGUugGaCGGCAcgcaGCGCu -3' miRNA: 3'- -UAGuaGCGUUU-CAugCgGCCGU----UGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 61915 | 0.68 | 0.793806 |
Target: 5'- -aCGcCGCAGGGcUGCGCCGGCu-CGa -3' miRNA: 3'- uaGUaGCGUUUC-AUGCGGCCGuuGCg -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 59627 | 0.68 | 0.812388 |
Target: 5'- cAUCAUCGCAAAuucgacuuucacuGcacgGCGCCacGCGGCGCc -3' miRNA: 3'- -UAGUAGCGUUU-------------Ca---UGCGGc-CGUUGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 7974 | 0.68 | 0.790811 |
Target: 5'- ---uUCGCGAAgcgcucacgaccucGUAgcCGCCGGCGGCGUu -3' miRNA: 3'- uaguAGCGUUU--------------CAU--GCGGCCGUUGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 5010 | 0.68 | 0.783765 |
Target: 5'- cGUCGUCGaccca-GCGCCGG-AACGCg -3' miRNA: 3'- -UAGUAGCguuucaUGCGGCCgUUGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 12467 | 0.68 | 0.813347 |
Target: 5'- -aCGUCGCucacGGgGCGCCGcGCGgcauACGCa -3' miRNA: 3'- uaGUAGCGuu--UCaUGCGGC-CGU----UGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 60488 | 0.68 | 0.813347 |
Target: 5'- gAUCAggGCGAG--ACGCCGgGCcGCGCg -3' miRNA: 3'- -UAGUagCGUUUcaUGCGGC-CGuUGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 21694 | 0.68 | 0.813347 |
Target: 5'- -gCcgCGCugcuGUACGCgGGCA-CGCa -3' miRNA: 3'- uaGuaGCGuuu-CAUGCGgCCGUuGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 31931 | 0.68 | 0.80367 |
Target: 5'- -aCGUCGCcaccugcuGUACGgCGGUGugGCg -3' miRNA: 3'- uaGUAGCGuuu-----CAUGCgGCCGUugCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 30671 | 0.68 | 0.80367 |
Target: 5'- -aCAUCGaCAgcGgACGCUGGaCGGCGCu -3' miRNA: 3'- uaGUAGC-GUuuCaUGCGGCC-GUUGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 17958 | 0.68 | 0.80367 |
Target: 5'- gAUCGucUCGCAucGgacgcaGCGCCGGaaguGCGCa -3' miRNA: 3'- -UAGU--AGCGUuuCa-----UGCGGCCgu--UGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 56953 | 0.68 | 0.793806 |
Target: 5'- gAUCcgCGCGggcGAGUuCGCgGGCGugGUc -3' miRNA: 3'- -UAGuaGCGU---UUCAuGCGgCCGUugCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 39190 | 0.68 | 0.813347 |
Target: 5'- -aUAUCGUcuGGgAUGCCGGCAACu- -3' miRNA: 3'- uaGUAGCGuuUCaUGCGGCCGUUGcg -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 38953 | 0.68 | 0.80367 |
Target: 5'- -aCuggCGCAGGGUgaucggcacgGCGCCGGCcGCGa -3' miRNA: 3'- uaGua-GCGUUUCA----------UGCGGCCGuUGCg -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 31557 | 0.68 | 0.817162 |
Target: 5'- cGUCAUccagCGCAAGaccgagcucgaauccG-ACGCCGGCGAuCGCa -3' miRNA: 3'- -UAGUA----GCGUUU---------------CaUGCGGCCGUU-GCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 16898 | 0.68 | 0.813347 |
Target: 5'- gAUCGcccugCGCGAGGUACGUuucagcgaucuuCGGCA-CGCc -3' miRNA: 3'- -UAGUa----GCGUUUCAUGCG------------GCCGUuGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 33714 | 0.68 | 0.821886 |
Target: 5'- uGUCGUCGCccuucuugccggcGucGUcguCGCCGGCAGCa- -3' miRNA: 3'- -UAGUAGCG-------------UuuCAu--GCGGCCGUUGcg -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 24214 | 0.69 | 0.752704 |
Target: 5'- ----cCGCGAcGcUGCGCCGGCA-CGCc -3' miRNA: 3'- uaguaGCGUUuC-AUGCGGCCGUuGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 14617 | 0.69 | 0.772531 |
Target: 5'- gAUCAUCGCc--GUGCGCgccgcugCGGcCGAUGCg -3' miRNA: 3'- -UAGUAGCGuuuCAUGCG-------GCC-GUUGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 25912 | 0.69 | 0.763202 |
Target: 5'- -gCAgcgCGCAuGGUACGUCGccacgcGCGACGCc -3' miRNA: 3'- uaGUa--GCGUuUCAUGCGGC------CGUUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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