miRNA display CGI


Results 61 - 80 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24101 3' -51.8 NC_005262.1 + 34575 0.7 0.709552
Target:  5'- -aCGUCGUgu-GcGCGCCGuGCGGCGCc -3'
miRNA:   3'- uaGUAGCGuuuCaUGCGGC-CGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 15690 0.7 0.709552
Target:  5'- uUCGUCGCcGAG-ACGgaCGaGCAGCGCu -3'
miRNA:   3'- uAGUAGCGuUUCaUGCg-GC-CGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 61445 0.7 0.709552
Target:  5'- -aCGUCGCGAAGaagGCGgcggaCGGCGaaGCGCu -3'
miRNA:   3'- uaGUAGCGUUUCa--UGCg----GCCGU--UGCG- -5'
24101 3' -51.8 NC_005262.1 + 37806 0.7 0.676312
Target:  5'- -aCGUCGCGAAcGUGCccGCCGuGUAcuGCGCg -3'
miRNA:   3'- uaGUAGCGUUU-CAUG--CGGC-CGU--UGCG- -5'
24101 3' -51.8 NC_005262.1 + 28534 0.7 0.709552
Target:  5'- cGUgGUCGUGccGUuCGCCGGgGGCGCc -3'
miRNA:   3'- -UAgUAGCGUuuCAuGCGGCCgUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 54817 0.69 0.731336
Target:  5'- uUUAUgCGCGGGGUugGCUGGCucCGg -3'
miRNA:   3'- uAGUA-GCGUUUCAugCGGCCGuuGCg -5'
24101 3' -51.8 NC_005262.1 + 40095 0.69 0.751648
Target:  5'- cGUgGUCGacc-GUGCGCCGGUAgacccacACGCg -3'
miRNA:   3'- -UAgUAGCguuuCAUGCGGCCGU-------UGCG- -5'
24101 3' -51.8 NC_005262.1 + 8935 0.69 0.752704
Target:  5'- cUCGUUGUAGuAGUugacgaGCCGGuCGGCGCg -3'
miRNA:   3'- uAGUAGCGUU-UCAug----CGGCC-GUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 17332 0.69 0.75692
Target:  5'- -gCGUCGUGgccggcgcggcauucGGGUccgGCGCgGGCGGCGCg -3'
miRNA:   3'- uaGUAGCGU---------------UUCA---UGCGgCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 5582 0.69 0.763202
Target:  5'- uUCGUgGUAcGGgcgGCGCCgcucuccgcaGGCGACGCg -3'
miRNA:   3'- uAGUAgCGUuUCa--UGCGG----------CCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 15733 0.69 0.730256
Target:  5'- cUCGUCGCGgcAGGUGCGaCCGacGCGcuugcggGCGCg -3'
miRNA:   3'- uAGUAGCGU--UUCAUGC-GGC--CGU-------UGCG- -5'
24101 3' -51.8 NC_005262.1 + 49905 0.69 0.752704
Target:  5'- uUUGUCGaGAGG-ACGCCGGgGACGUu -3'
miRNA:   3'- uAGUAGCgUUUCaUGCGGCCgUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 25912 0.69 0.763202
Target:  5'- -gCAgcgCGCAuGGUACGUCGccacgcGCGACGCc -3'
miRNA:   3'- uaGUa--GCGUuUCAUGCGGC------CGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 14617 0.69 0.772531
Target:  5'- gAUCAUCGCc--GUGCGCgccgcugCGGcCGAUGCg -3'
miRNA:   3'- -UAGUAGCGuuuCAUGCG-------GCC-GUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 37858 0.69 0.763202
Target:  5'- cUCGUUGCcggaAAAGUcgGCGUCGcGCGugGCg -3'
miRNA:   3'- uAGUAGCG----UUUCA--UGCGGC-CGUugCG- -5'
24101 3' -51.8 NC_005262.1 + 24214 0.69 0.752704
Target:  5'- ----cCGCGAcGcUGCGCCGGCA-CGCc -3'
miRNA:   3'- uaguaGCGUUuC-AUGCGGCCGUuGCG- -5'
24101 3' -51.8 NC_005262.1 + 1989 0.69 0.730256
Target:  5'- cUCGagCGCGAGGcaUGCGCCGcGCAggcgaaaACGCg -3'
miRNA:   3'- uAGUa-GCGUUUC--AUGCGGC-CGU-------UGCG- -5'
24101 3' -51.8 NC_005262.1 + 24802 0.68 0.821886
Target:  5'- -aCAUCGCGAAGggcaaGCGCgagcucgcgaucgCGGcCGGCGCc -3'
miRNA:   3'- uaGUAGCGUUUCa----UGCG-------------GCC-GUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 58857 0.68 0.822825
Target:  5'- --gAUCgGCGAcGUcACGCCGGCGcagcccGCGCg -3'
miRNA:   3'- uagUAG-CGUUuCA-UGCGGCCGU------UGCG- -5'
24101 3' -51.8 NC_005262.1 + 15158 0.68 0.822825
Target:  5'- aGUCggCGCGGAuGUugGaCGGCAcgcaGCGCu -3'
miRNA:   3'- -UAGuaGCGUUU-CAugCgGCCGU----UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.