Results 61 - 80 of 174 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
24101 | 3' | -51.8 | NC_005262.1 | + | 58585 | 0.7 | 0.72049 |
Target: 5'- gAUCGU-GCAGgauacgcccucGGUcGCGCCGGCcGCGCc -3' miRNA: 3'- -UAGUAgCGUU-----------UCA-UGCGGCCGuUGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 30640 | 0.7 | 0.72049 |
Target: 5'- cUCG--GCAAGGUgcccGCGUCGGaCAACGCg -3' miRNA: 3'- uAGUagCGUUUCA----UGCGGCC-GUUGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 48252 | 0.7 | 0.72049 |
Target: 5'- -aCAagGCAAugauggggacGUAUGCCgGGCAGCGCg -3' miRNA: 3'- uaGUagCGUUu---------CAUGCGG-CCGUUGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 52420 | 0.7 | 0.72049 |
Target: 5'- --gAUCGCGGAG-GCG-CGGCAaaGCGCa -3' miRNA: 3'- uagUAGCGUUUCaUGCgGCCGU--UGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 31055 | 0.7 | 0.72049 |
Target: 5'- -gCGUCGCucacGGAGUGgucgGCCGGCAgcACGCc -3' miRNA: 3'- uaGUAGCG----UUUCAUg---CGGCCGU--UGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 15733 | 0.69 | 0.730256 |
Target: 5'- cUCGUCGCGgcAGGUGCGaCCGacGCGcuugcggGCGCg -3' miRNA: 3'- uAGUAGCGU--UUCAUGC-GGC--CGU-------UGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 1989 | 0.69 | 0.730256 |
Target: 5'- cUCGagCGCGAGGcaUGCGCCGcGCAggcgaaaACGCg -3' miRNA: 3'- uAGUa-GCGUUUC--AUGCGGC-CGU-------UGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 54817 | 0.69 | 0.731336 |
Target: 5'- uUUAUgCGCGGGGUugGCUGGCucCGg -3' miRNA: 3'- uAGUA-GCGUUUCAugCGGCCGuuGCg -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 40095 | 0.69 | 0.751648 |
Target: 5'- cGUgGUCGacc-GUGCGCCGGUAgacccacACGCg -3' miRNA: 3'- -UAgUAGCguuuCAUGCGGCCGU-------UGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 8935 | 0.69 | 0.752704 |
Target: 5'- cUCGUUGUAGuAGUugacgaGCCGGuCGGCGCg -3' miRNA: 3'- uAGUAGCGUU-UCAug----CGGCC-GUUGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 24214 | 0.69 | 0.752704 |
Target: 5'- ----cCGCGAcGcUGCGCCGGCA-CGCc -3' miRNA: 3'- uaguaGCGUUuC-AUGCGGCCGUuGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 49905 | 0.69 | 0.752704 |
Target: 5'- uUUGUCGaGAGG-ACGCCGGgGACGUu -3' miRNA: 3'- uAGUAGCgUUUCaUGCGGCCgUUGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 17332 | 0.69 | 0.75692 |
Target: 5'- -gCGUCGUGgccggcgcggcauucGGGUccgGCGCgGGCGGCGCg -3' miRNA: 3'- uaGUAGCGU---------------UUCA---UGCGgCCGUUGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 5582 | 0.69 | 0.763202 |
Target: 5'- uUCGUgGUAcGGgcgGCGCCgcucuccgcaGGCGACGCg -3' miRNA: 3'- uAGUAgCGUuUCa--UGCGG----------CCGUUGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 37858 | 0.69 | 0.763202 |
Target: 5'- cUCGUUGCcggaAAAGUcgGCGUCGcGCGugGCg -3' miRNA: 3'- uAGUAGCG----UUUCA--UGCGGC-CGUugCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 25912 | 0.69 | 0.763202 |
Target: 5'- -gCAgcgCGCAuGGUACGUCGccacgcGCGACGCc -3' miRNA: 3'- uaGUa--GCGUuUCAUGCGGC------CGUUGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 14617 | 0.69 | 0.772531 |
Target: 5'- gAUCAUCGCc--GUGCGCgccgcugCGGcCGAUGCg -3' miRNA: 3'- -UAGUAGCGuuuCAUGCG-------GCC-GUUGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 5010 | 0.68 | 0.783765 |
Target: 5'- cGUCGUCGaccca-GCGCCGG-AACGCg -3' miRNA: 3'- -UAGUAGCguuucaUGCGGCCgUUGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 7974 | 0.68 | 0.790811 |
Target: 5'- ---uUCGCGAAgcgcucacgaccucGUAgcCGCCGGCGGCGUu -3' miRNA: 3'- uaguAGCGUUU--------------CAU--GCGGCCGUUGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 56953 | 0.68 | 0.793806 |
Target: 5'- gAUCcgCGCGggcGAGUuCGCgGGCGugGUc -3' miRNA: 3'- -UAGuaGCGU---UUCAuGCGgCCGUugCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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