miRNA display CGI


Results 81 - 100 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24101 3' -51.8 NC_005262.1 + 56953 0.68 0.793806
Target:  5'- gAUCcgCGCGggcGAGUuCGCgGGCGugGUc -3'
miRNA:   3'- -UAGuaGCGU---UUCAuGCGgCCGUugCG- -5'
24101 3' -51.8 NC_005262.1 + 60249 0.68 0.793806
Target:  5'- cGUCAaggcCGCGA--UACGCCGGCAGUGUc -3'
miRNA:   3'- -UAGUa---GCGUUucAUGCGGCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 17958 0.68 0.80367
Target:  5'- gAUCGucUCGCAucGgacgcaGCGCCGGaaguGCGCa -3'
miRNA:   3'- -UAGU--AGCGUuuCa-----UGCGGCCgu--UGCG- -5'
24101 3' -51.8 NC_005262.1 + 30671 0.68 0.80367
Target:  5'- -aCAUCGaCAgcGgACGCUGGaCGGCGCu -3'
miRNA:   3'- uaGUAGC-GUuuCaUGCGGCC-GUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 31931 0.68 0.80367
Target:  5'- -aCGUCGCcaccugcuGUACGgCGGUGugGCg -3'
miRNA:   3'- uaGUAGCGuuu-----CAUGCgGCCGUugCG- -5'
24101 3' -51.8 NC_005262.1 + 38953 0.68 0.80367
Target:  5'- -aCuggCGCAGGGUgaucggcacgGCGCCGGCcGCGa -3'
miRNA:   3'- uaGua-GCGUUUCA----------UGCGGCCGuUGCg -5'
24101 3' -51.8 NC_005262.1 + 59627 0.68 0.812388
Target:  5'- cAUCAUCGCAAAuucgacuuucacuGcacgGCGCCacGCGGCGCc -3'
miRNA:   3'- -UAGUAGCGUUU-------------Ca---UGCGGc-CGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 21694 0.68 0.813347
Target:  5'- -gCcgCGCugcuGUACGCgGGCA-CGCa -3'
miRNA:   3'- uaGuaGCGuuu-CAUGCGgCCGUuGCG- -5'
24101 3' -51.8 NC_005262.1 + 39190 0.68 0.813347
Target:  5'- -aUAUCGUcuGGgAUGCCGGCAACu- -3'
miRNA:   3'- uaGUAGCGuuUCaUGCGGCCGUUGcg -5'
24101 3' -51.8 NC_005262.1 + 60488 0.68 0.813347
Target:  5'- gAUCAggGCGAG--ACGCCGgGCcGCGCg -3'
miRNA:   3'- -UAGUagCGUUUcaUGCGGC-CGuUGCG- -5'
24101 3' -51.8 NC_005262.1 + 12467 0.68 0.813347
Target:  5'- -aCGUCGCucacGGgGCGCCGcGCGgcauACGCa -3'
miRNA:   3'- uaGUAGCGuu--UCaUGCGGC-CGU----UGCG- -5'
24101 3' -51.8 NC_005262.1 + 16898 0.68 0.813347
Target:  5'- gAUCGcccugCGCGAGGUACGUuucagcgaucuuCGGCA-CGCc -3'
miRNA:   3'- -UAGUa----GCGUUUCAUGCG------------GCCGUuGCG- -5'
24101 3' -51.8 NC_005262.1 + 31557 0.68 0.817162
Target:  5'- cGUCAUccagCGCAAGaccgagcucgaauccG-ACGCCGGCGAuCGCa -3'
miRNA:   3'- -UAGUA----GCGUUU---------------CaUGCGGCCGUU-GCG- -5'
24101 3' -51.8 NC_005262.1 + 24802 0.68 0.821886
Target:  5'- -aCAUCGCGAAGggcaaGCGCgagcucgcgaucgCGGcCGGCGCc -3'
miRNA:   3'- uaGUAGCGUUUCa----UGCG-------------GCC-GUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 33714 0.68 0.821886
Target:  5'- uGUCGUCGCccuucuugccggcGucGUcguCGCCGGCAGCa- -3'
miRNA:   3'- -UAGUAGCG-------------UuuCAu--GCGGCCGUUGcg -5'
24101 3' -51.8 NC_005262.1 + 51312 0.68 0.822825
Target:  5'- ---uUCGCucacugcGUAUGCCGcGCGGCGCc -3'
miRNA:   3'- uaguAGCGuuu----CAUGCGGC-CGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 21053 0.68 0.822825
Target:  5'- gAUCGUCGUGccGUagGCGCCGagcGCGACGa -3'
miRNA:   3'- -UAGUAGCGUuuCA--UGCGGC---CGUUGCg -5'
24101 3' -51.8 NC_005262.1 + 15158 0.68 0.822825
Target:  5'- aGUCggCGCGGAuGUugGaCGGCAcgcaGCGCu -3'
miRNA:   3'- -UAGuaGCGUUU-CAugCgGCCGU----UGCG- -5'
24101 3' -51.8 NC_005262.1 + 58857 0.68 0.822825
Target:  5'- --gAUCgGCGAcGUcACGCCGGCGcagcccGCGCg -3'
miRNA:   3'- uagUAG-CGUUuCA-UGCGGCCGU------UGCG- -5'
24101 3' -51.8 NC_005262.1 + 39247 0.68 0.822825
Target:  5'- gAUCA--GCAGGaucACGCCGGCGAuCGCg -3'
miRNA:   3'- -UAGUagCGUUUca-UGCGGCCGUU-GCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.