miRNA display CGI


Results 61 - 80 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24101 3' -51.8 NC_005262.1 + 35842 0.67 0.853423
Target:  5'- cGUCGgcgcCGCGAccgcccagauguuuGUGCG-CGGCGACGCg -3'
miRNA:   3'- -UAGUa---GCGUUu-------------CAUGCgGCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 30763 0.67 0.849962
Target:  5'- -aCGUCGgGcGGUACGUCaGCAucagGCGCa -3'
miRNA:   3'- uaGUAGCgUuUCAUGCGGcCGU----UGCG- -5'
24101 3' -51.8 NC_005262.1 + 47893 0.67 0.849962
Target:  5'- -gCAUCGCGgcGcACGUCGcGCGcACGCg -3'
miRNA:   3'- uaGUAGCGUuuCaUGCGGC-CGU-UGCG- -5'
24101 3' -51.8 NC_005262.1 + 5977 0.67 0.849962
Target:  5'- aAUgAUCGUgc-GUA-GCCGGCAAUGCc -3'
miRNA:   3'- -UAgUAGCGuuuCAUgCGGCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 29205 0.67 0.849962
Target:  5'- gGUCAUCgGCAAGaUGcCGCCGGagauCGCg -3'
miRNA:   3'- -UAGUAG-CGUUUcAU-GCGGCCguu-GCG- -5'
24101 3' -51.8 NC_005262.1 + 45692 0.67 0.849962
Target:  5'- uUCGUgCGCAucGaGgGCCGGCAGCcgGCc -3'
miRNA:   3'- uAGUA-GCGUuuCaUgCGGCCGUUG--CG- -5'
24101 3' -51.8 NC_005262.1 + 6439 0.67 0.847341
Target:  5'- cGUCcuUCGUguAGUucggcuccggcgagACGCCGGCAucgACGCg -3'
miRNA:   3'- -UAGu-AGCGuuUCA--------------UGCGGCCGU---UGCG- -5'
24101 3' -51.8 NC_005262.1 + 10341 0.67 0.841142
Target:  5'- -cCGUUGUccucgACGCCGGCGccGCGCu -3'
miRNA:   3'- uaGUAGCGuuucaUGCGGCCGU--UGCG- -5'
24101 3' -51.8 NC_005262.1 + 4077 0.67 0.841142
Target:  5'- -aCGUUGUAcaccuUGCCGGCGACGUa -3'
miRNA:   3'- uaGUAGCGUuucauGCGGCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 11556 0.67 0.841142
Target:  5'- -gCAUUGUAGAcgAUGCCGauuGCGACGCa -3'
miRNA:   3'- uaGUAGCGUUUcaUGCGGC---CGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 48472 0.67 0.841142
Target:  5'- --gAUCGCGAGccgcGUGgGCacgGGCGGCGCg -3'
miRNA:   3'- uagUAGCGUUU----CAUgCGg--CCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 31706 0.67 0.838451
Target:  5'- -gCAUCGaCcAAGUGCgucacucgguuucgGCCGGCGGuCGCa -3'
miRNA:   3'- uaGUAGC-GuUUCAUG--------------CGGCCGUU-GCG- -5'
24101 3' -51.8 NC_005262.1 + 29029 0.67 0.832093
Target:  5'- gAUCcgCcgaGCucGAGcgGCGCCGGCAcgACGCg -3'
miRNA:   3'- -UAGuaG---CGu-UUCa-UGCGGCCGU--UGCG- -5'
24101 3' -51.8 NC_005262.1 + 35496 0.68 0.826558
Target:  5'- gAUCAUgcgcacgcgcuugcgCGCAuAGgcgacaGCGCCGGCcguGACGCu -3'
miRNA:   3'- -UAGUA---------------GCGUuUCa-----UGCGGCCG---UUGCG- -5'
24101 3' -51.8 NC_005262.1 + 15158 0.68 0.822825
Target:  5'- aGUCggCGCGGAuGUugGaCGGCAcgcaGCGCu -3'
miRNA:   3'- -UAGuaGCGUUU-CAugCgGCCGU----UGCG- -5'
24101 3' -51.8 NC_005262.1 + 51312 0.68 0.822825
Target:  5'- ---uUCGCucacugcGUAUGCCGcGCGGCGCc -3'
miRNA:   3'- uaguAGCGuuu----CAUGCGGC-CGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 58857 0.68 0.822825
Target:  5'- --gAUCgGCGAcGUcACGCCGGCGcagcccGCGCg -3'
miRNA:   3'- uagUAG-CGUUuCA-UGCGGCCGU------UGCG- -5'
24101 3' -51.8 NC_005262.1 + 21053 0.68 0.822825
Target:  5'- gAUCGUCGUGccGUagGCGCCGagcGCGACGa -3'
miRNA:   3'- -UAGUAGCGUuuCA--UGCGGC---CGUUGCg -5'
24101 3' -51.8 NC_005262.1 + 39247 0.68 0.822825
Target:  5'- gAUCA--GCAGGaucACGCCGGCGAuCGCg -3'
miRNA:   3'- -UAGUagCGUUUca-UGCGGCCGUU-GCG- -5'
24101 3' -51.8 NC_005262.1 + 24802 0.68 0.821886
Target:  5'- -aCAUCGCGAAGggcaaGCGCgagcucgcgaucgCGGcCGGCGCc -3'
miRNA:   3'- uaGUAGCGUUUCa----UGCG-------------GCC-GUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.