miRNA display CGI


Results 41 - 60 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24101 3' -51.8 NC_005262.1 + 17035 0.77 0.320809
Target:  5'- -gCGUCGCcgccuGUACGaCCGGCGugGCg -3'
miRNA:   3'- uaGUAGCGuuu--CAUGC-GGCCGUugCG- -5'
24101 3' -51.8 NC_005262.1 + 17059 0.67 0.855994
Target:  5'- cUCGUCGCGcgcacggcgccgauAGGcGCGCCcGuCGACGCg -3'
miRNA:   3'- uAGUAGCGU--------------UUCaUGCGGcC-GUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 17070 0.66 0.911301
Target:  5'- gAUCcgGUCGUgccGGAuUGCGCCGGCuuguccacuGCGCg -3'
miRNA:   3'- -UAG--UAGCG---UUUcAUGCGGCCGu--------UGCG- -5'
24101 3' -51.8 NC_005262.1 + 17150 0.74 0.478243
Target:  5'- -gCGUCGCAaucGAGaAgGCCGGCAAgGCc -3'
miRNA:   3'- uaGUAGCGU---UUCaUgCGGCCGUUgCG- -5'
24101 3' -51.8 NC_005262.1 + 17206 0.66 0.911301
Target:  5'- -gCGUCugcgGCGAGGacgGCGCUGGCGuCGUg -3'
miRNA:   3'- uaGUAG----CGUUUCa--UGCGGCCGUuGCG- -5'
24101 3' -51.8 NC_005262.1 + 17248 0.72 0.597735
Target:  5'- -gCGUCGCgGGAGcgGCgGCCGGCGccGCGCu -3'
miRNA:   3'- uaGUAGCG-UUUCa-UG-CGGCCGU--UGCG- -5'
24101 3' -51.8 NC_005262.1 + 17332 0.69 0.75692
Target:  5'- -gCGUCGUGgccggcgcggcauucGGGUccgGCGCgGGCGGCGCg -3'
miRNA:   3'- uaGUAGCGU---------------UUCA---UGCGgCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 17454 0.67 0.861906
Target:  5'- gAUCAcguucgaggacuUCGCcGAGUuccaggacgaagcgcGCGCCGcgcGCGACGCg -3'
miRNA:   3'- -UAGU------------AGCGuUUCA---------------UGCGGC---CGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 17547 0.72 0.575407
Target:  5'- gGUCGcgCGCGAGGcgGCaGCCgcGGCGGCGCg -3'
miRNA:   3'- -UAGUa-GCGUUUCa-UG-CGG--CCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 17604 0.73 0.542302
Target:  5'- -gCAgcgCGCGGAGcuggaGCGCCaGCAGCGCg -3'
miRNA:   3'- uaGUa--GCGUUUCa----UGCGGcCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 17730 0.66 0.874955
Target:  5'- ----aUGCGGAGcACGucauacaguCCGGCGACGCg -3'
miRNA:   3'- uaguaGCGUUUCaUGC---------GGCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 17958 0.68 0.80367
Target:  5'- gAUCGucUCGCAucGgacgcaGCGCCGGaaguGCGCa -3'
miRNA:   3'- -UAGU--AGCGUuuCa-----UGCGGCCgu--UGCG- -5'
24101 3' -51.8 NC_005262.1 + 19294 0.74 0.457715
Target:  5'- uAUCGUCGCAGccgacGUGC-UCGGCGAUGCg -3'
miRNA:   3'- -UAGUAGCGUUu----CAUGcGGCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 21053 0.68 0.822825
Target:  5'- gAUCGUCGUGccGUagGCGCCGagcGCGACGa -3'
miRNA:   3'- -UAGUAGCGUuuCA--UGCGGC---CGUUGCg -5'
24101 3' -51.8 NC_005262.1 + 21694 0.68 0.813347
Target:  5'- -gCcgCGCugcuGUACGCgGGCA-CGCa -3'
miRNA:   3'- uaGuaGCGuuu-CAUGCGgCCGUuGCG- -5'
24101 3' -51.8 NC_005262.1 + 22307 0.66 0.907308
Target:  5'- --gAUCGguGAcggugugauuGUGCGCCGGCAucugggcugcggucaGCGUa -3'
miRNA:   3'- uagUAGCguUU----------CAUGCGGCCGU---------------UGCG- -5'
24101 3' -51.8 NC_005262.1 + 23311 0.66 0.882772
Target:  5'- cAUCAagCGCAucAAG-GCGCCGcGCAcgagcACGCg -3'
miRNA:   3'- -UAGUa-GCGU--UUCaUGCGGC-CGU-----UGCG- -5'
24101 3' -51.8 NC_005262.1 + 23550 0.66 0.874955
Target:  5'- uGUCAUUGC----UGCGCgCGGUcACGCg -3'
miRNA:   3'- -UAGUAGCGuuucAUGCG-GCCGuUGCG- -5'
24101 3' -51.8 NC_005262.1 + 23820 0.66 0.874955
Target:  5'- -aCGaCGCGcAGGUAC-UCGGCAACGUa -3'
miRNA:   3'- uaGUaGCGU-UUCAUGcGGCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 23827 0.75 0.408568
Target:  5'- gGUCAUCuCAuGG-GCGCCGGCgAGCGCa -3'
miRNA:   3'- -UAGUAGcGUuUCaUGCGGCCG-UUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.