miRNA display CGI


Results 61 - 80 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24101 3' -51.8 NC_005262.1 + 24214 0.69 0.752704
Target:  5'- ----cCGCGAcGcUGCGCCGGCA-CGCc -3'
miRNA:   3'- uaguaGCGUUuC-AUGCGGCCGUuGCG- -5'
24101 3' -51.8 NC_005262.1 + 24802 0.68 0.821886
Target:  5'- -aCAUCGCGAAGggcaaGCGCgagcucgcgaucgCGGcCGGCGCc -3'
miRNA:   3'- uaGUAGCGUUUCa----UGCG-------------GCC-GUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 24988 0.71 0.665128
Target:  5'- gGUCAgCGUAuccGUugcucGCGCCGuGCAGCGCa -3'
miRNA:   3'- -UAGUaGCGUuu-CA-----UGCGGC-CGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 25536 0.66 0.904589
Target:  5'- -gCGUCGCGAcguccGUGCGC-GGCGGCa- -3'
miRNA:   3'- uaGUAGCGUUu----CAUGCGgCCGUUGcg -5'
24101 3' -51.8 NC_005262.1 + 25912 0.69 0.763202
Target:  5'- -gCAgcgCGCAuGGUACGUCGccacgcGCGACGCc -3'
miRNA:   3'- uaGUa--GCGUuUCAUGCGGC------CGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 26576 0.66 0.897594
Target:  5'- aGUUcgCGCAGGcaUACGCUGGCGGCc- -3'
miRNA:   3'- -UAGuaGCGUUUc-AUGCGGCCGUUGcg -5'
24101 3' -51.8 NC_005262.1 + 27056 0.73 0.520584
Target:  5'- cGUCGUgCGCAGAacUGCGCCcGCGGCGCc -3'
miRNA:   3'- -UAGUA-GCGUUUc-AUGCGGcCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 27555 0.74 0.447629
Target:  5'- cUCAgccccgGCGAGG-ACGCCGcGCAGCGCg -3'
miRNA:   3'- uAGUag----CGUUUCaUGCGGC-CGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 27860 0.79 0.254567
Target:  5'- -gCGUCGCAAGG-ACGgCGGCAAgGCg -3'
miRNA:   3'- uaGUAGCGUUUCaUGCgGCCGUUgCG- -5'
24101 3' -51.8 NC_005262.1 + 28534 0.7 0.709552
Target:  5'- cGUgGUCGUGccGUuCGCCGGgGGCGCc -3'
miRNA:   3'- -UAgUAGCGUuuCAuGCGGCCgUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 28593 0.71 0.642676
Target:  5'- cAUCcUUGCGGAcGUAgGCUGGCcACGCg -3'
miRNA:   3'- -UAGuAGCGUUU-CAUgCGGCCGuUGCG- -5'
24101 3' -51.8 NC_005262.1 + 29029 0.67 0.832093
Target:  5'- gAUCcgCcgaGCucGAGcgGCGCCGGCAcgACGCg -3'
miRNA:   3'- -UAGuaG---CGu-UUCa-UGCGGCCGU--UGCG- -5'
24101 3' -51.8 NC_005262.1 + 29205 0.67 0.849962
Target:  5'- gGUCAUCgGCAAGaUGcCGCCGGagauCGCg -3'
miRNA:   3'- -UAGUAG-CGUUUcAU-GCGGCCguu-GCG- -5'
24101 3' -51.8 NC_005262.1 + 29292 0.66 0.874955
Target:  5'- cGUCGucUCGCAGaAGUcgcGCGCC-GCcGCGCg -3'
miRNA:   3'- -UAGU--AGCGUU-UCA---UGCGGcCGuUGCG- -5'
24101 3' -51.8 NC_005262.1 + 30142 0.67 0.857696
Target:  5'- cUgGUCGcCGAA--GCGCCGGCGgaugccgACGCg -3'
miRNA:   3'- uAgUAGC-GUUUcaUGCGGCCGU-------UGCG- -5'
24101 3' -51.8 NC_005262.1 + 30569 0.66 0.897594
Target:  5'- -gCGUCGauguugACGUCGGCAAUGUg -3'
miRNA:   3'- uaGUAGCguuucaUGCGGCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 30640 0.7 0.72049
Target:  5'- cUCG--GCAAGGUgcccGCGUCGGaCAACGCg -3'
miRNA:   3'- uAGUagCGUUUCA----UGCGGCC-GUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 30671 0.68 0.80367
Target:  5'- -aCAUCGaCAgcGgACGCUGGaCGGCGCu -3'
miRNA:   3'- uaGUAGC-GUuuCaUGCGGCC-GUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 30763 0.67 0.849962
Target:  5'- -aCGUCGgGcGGUACGUCaGCAucagGCGCa -3'
miRNA:   3'- uaGUAGCgUuUCAUGCGGcCGU----UGCG- -5'
24101 3' -51.8 NC_005262.1 + 30815 0.84 0.117332
Target:  5'- -aCAUCGCAAacccGGUGCGCgucuCGGCGACGCg -3'
miRNA:   3'- uaGUAGCGUU----UCAUGCG----GCCGUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.