miRNA display CGI


Results 81 - 100 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24101 3' -51.8 NC_005262.1 + 30869 0.7 0.676312
Target:  5'- --gAUCGUGAAG-GCGCUGGCGagcgucGCGCg -3'
miRNA:   3'- uagUAGCGUUUCaUGCGGCCGU------UGCG- -5'
24101 3' -51.8 NC_005262.1 + 31055 0.7 0.72049
Target:  5'- -gCGUCGCucacGGAGUGgucgGCCGGCAgcACGCc -3'
miRNA:   3'- uaGUAGCG----UUUCAUg---CGGCCGU--UGCG- -5'
24101 3' -51.8 NC_005262.1 + 31101 0.74 0.488676
Target:  5'- --uGUCGCccaccuGGAGgccgGCgGCCGGCAGCGCg -3'
miRNA:   3'- uagUAGCG------UUUCa---UG-CGGCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 31557 0.68 0.817162
Target:  5'- cGUCAUccagCGCAAGaccgagcucgaauccG-ACGCCGGCGAuCGCa -3'
miRNA:   3'- -UAGUA----GCGUUU---------------CaUGCGGCCGUU-GCG- -5'
24101 3' -51.8 NC_005262.1 + 31706 0.67 0.838451
Target:  5'- -gCAUCGaCcAAGUGCgucacucgguuucgGCCGGCGGuCGCa -3'
miRNA:   3'- uaGUAGC-GuUUCAUG--------------CGGCCGUU-GCG- -5'
24101 3' -51.8 NC_005262.1 + 31931 0.68 0.80367
Target:  5'- -aCGUCGCcaccugcuGUACGgCGGUGugGCg -3'
miRNA:   3'- uaGUAGCGuuu-----CAUGCgGCCGUugCG- -5'
24101 3' -51.8 NC_005262.1 + 32165 0.67 0.866877
Target:  5'- -gCAUCGCc--GUAgGUCGGCuugccGCGCa -3'
miRNA:   3'- uaGUAGCGuuuCAUgCGGCCGu----UGCG- -5'
24101 3' -51.8 NC_005262.1 + 32425 0.66 0.904589
Target:  5'- -cCAUCGCugccGGUuucauCGCCGGCAugaagaaggcuCGCu -3'
miRNA:   3'- uaGUAGCGuu--UCAu----GCGGCCGUu----------GCG- -5'
24101 3' -51.8 NC_005262.1 + 33619 0.66 0.897594
Target:  5'- -aCGUCGCAGGaaaaGCCGcCGGCGCa -3'
miRNA:   3'- uaGUAGCGUUUcaugCGGCcGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 33714 0.68 0.821886
Target:  5'- uGUCGUCGCccuucuugccggcGucGUcguCGCCGGCAGCa- -3'
miRNA:   3'- -UAGUAGCG-------------UuuCAu--GCGGCCGUUGcg -5'
24101 3' -51.8 NC_005262.1 + 33794 0.73 0.499214
Target:  5'- cUCAUCGCuc---GCGCgGGCAACGUc -3'
miRNA:   3'- uAGUAGCGuuucaUGCGgCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 34060 0.67 0.866877
Target:  5'- -----aGCcGGGaGCGCCGGCuGCGCu -3'
miRNA:   3'- uaguagCGuUUCaUGCGGCCGuUGCG- -5'
24101 3' -51.8 NC_005262.1 + 34575 0.7 0.709552
Target:  5'- -aCGUCGUgu-GcGCGCCGuGCGGCGCc -3'
miRNA:   3'- uaGUAGCGuuuCaUGCGGC-CGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 35213 0.72 0.553275
Target:  5'- -aCGUcCGCAAGGaUGCggagGUCGGCGGCGCg -3'
miRNA:   3'- uaGUA-GCGUUUC-AUG----CGGCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 35496 0.68 0.826558
Target:  5'- gAUCAUgcgcacgcgcuugcgCGCAuAGgcgacaGCGCCGGCcguGACGCu -3'
miRNA:   3'- -UAGUA---------------GCGUuUCa-----UGCGGCCG---UUGCG- -5'
24101 3' -51.8 NC_005262.1 + 35618 0.66 0.897594
Target:  5'- -gCGUUGCAGu---CGuCCGGCAACGg -3'
miRNA:   3'- uaGUAGCGUUucauGC-GGCCGUUGCg -5'
24101 3' -51.8 NC_005262.1 + 35842 0.67 0.853423
Target:  5'- cGUCGgcgcCGCGAccgcccagauguuuGUGCG-CGGCGACGCg -3'
miRNA:   3'- -UAGUa---GCGUUu-------------CAUGCgGCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 36260 0.72 0.575407
Target:  5'- gAUCGUCaccgauGCAGAugcGUggGCGCgCGGCGACGCg -3'
miRNA:   3'- -UAGUAG------CGUUU---CA--UGCG-GCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 36414 0.66 0.882772
Target:  5'- aGUCcacguUCGCGGAG-GCGCCGaCGACGg -3'
miRNA:   3'- -UAGu----AGCGUUUCaUGCGGCcGUUGCg -5'
24101 3' -51.8 NC_005262.1 + 37154 0.66 0.89032
Target:  5'- aGUCAg-GC--GGUGCGCCaGCuACGCg -3'
miRNA:   3'- -UAGUagCGuuUCAUGCGGcCGuUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.