miRNA display CGI


Results 21 - 40 of 174 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24101 3' -51.8 NC_005262.1 + 55053 0.67 0.866877
Target:  5'- gAUgAUCGCGAcgggcauggaGGaGCGCCGGCuGgGCc -3'
miRNA:   3'- -UAgUAGCGUU----------UCaUGCGGCCGuUgCG- -5'
24101 3' -51.8 NC_005262.1 + 54817 0.69 0.731336
Target:  5'- uUUAUgCGCGGGGUugGCUGGCucCGg -3'
miRNA:   3'- uAGUA-GCGUUUCAugCGGCCGuuGCg -5'
24101 3' -51.8 NC_005262.1 + 54798 0.66 0.911301
Target:  5'- -aCGUCGCGcagAAGaUGCGCgCGGCGuuuaGCc -3'
miRNA:   3'- uaGUAGCGU---UUC-AUGCG-GCCGUug--CG- -5'
24101 3' -51.8 NC_005262.1 + 54172 0.66 0.911301
Target:  5'- --gAUCGUcAAG-GCGCCGGUccuguccgAGCGCg -3'
miRNA:   3'- uagUAGCGuUUCaUGCGGCCG--------UUGCG- -5'
24101 3' -51.8 NC_005262.1 + 53973 0.7 0.709552
Target:  5'- --aGUCGCucAAG-ACGCuCGGCGAUGCc -3'
miRNA:   3'- uagUAGCGu-UUCaUGCG-GCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 52690 0.66 0.904589
Target:  5'- cUCga-GCAggAAGgcCGCCGGcCGACGCc -3'
miRNA:   3'- uAGuagCGU--UUCauGCGGCC-GUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 52639 0.66 0.910643
Target:  5'- cGUUGUCGCAGGgccgcccGUGCGaCCGGagccACGCc -3'
miRNA:   3'- -UAGUAGCGUUU-------CAUGC-GGCCgu--UGCG- -5'
24101 3' -51.8 NC_005262.1 + 52420 0.7 0.72049
Target:  5'- --gAUCGCGGAG-GCG-CGGCAaaGCGCa -3'
miRNA:   3'- uagUAGCGUUUCaUGCgGCCGU--UGCG- -5'
24101 3' -51.8 NC_005262.1 + 52125 0.66 0.904589
Target:  5'- -gCG-CGCGAAGcucUGCCGGcCAGCGUg -3'
miRNA:   3'- uaGUaGCGUUUCau-GCGGCC-GUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 51840 0.7 0.709552
Target:  5'- -aCGUgCGCGAAGUGCugaaGCgCGGCGcCGCg -3'
miRNA:   3'- uaGUA-GCGUUUCAUG----CG-GCCGUuGCG- -5'
24101 3' -51.8 NC_005262.1 + 51750 0.73 0.509852
Target:  5'- uUCAgCGUGAGGUcugccAUGCCGGgGACGCg -3'
miRNA:   3'- uAGUaGCGUUUCA-----UGCGGCCgUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 51312 0.68 0.822825
Target:  5'- ---uUCGCucacugcGUAUGCCGcGCGGCGCc -3'
miRNA:   3'- uaguAGCGuuu----CAUGCGGC-CGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 51206 0.71 0.620184
Target:  5'- cUCAUcCGCGAcGccuCGCCGGCGGCaGCa -3'
miRNA:   3'- uAGUA-GCGUUuCau-GCGGCCGUUG-CG- -5'
24101 3' -51.8 NC_005262.1 + 51131 0.71 0.642676
Target:  5'- -aCGggCGCAGGGUuCGCCGcGCGccGCGCg -3'
miRNA:   3'- uaGUa-GCGUUUCAuGCGGC-CGU--UGCG- -5'
24101 3' -51.8 NC_005262.1 + 50830 0.66 0.911301
Target:  5'- gGUCGUCGaCGccGAGccgGUCGGCGAUGCc -3'
miRNA:   3'- -UAGUAGC-GU--UUCaugCGGCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 49905 0.69 0.752704
Target:  5'- uUUGUCGaGAGG-ACGCCGGgGACGUu -3'
miRNA:   3'- uAGUAGCgUUUCaUGCGGCCgUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 49745 0.74 0.457715
Target:  5'- ----cCGCAccG-ACGCCGGCGGCGCc -3'
miRNA:   3'- uaguaGCGUuuCaUGCGGCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 48649 0.67 0.866877
Target:  5'- cAUCcgCGCcGAcucgACGCCGGCcgcGAUGCg -3'
miRNA:   3'- -UAGuaGCGuUUca--UGCGGCCG---UUGCG- -5'
24101 3' -51.8 NC_005262.1 + 48605 0.73 0.509852
Target:  5'- uUCGUCGCcuugcAGaACGCCGcGUAGCGCu -3'
miRNA:   3'- uAGUAGCGuu---UCaUGCGGC-CGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 48472 0.67 0.841142
Target:  5'- --gAUCGCGAGccgcGUGgGCacgGGCGGCGCg -3'
miRNA:   3'- uagUAGCGUUU----CAUgCGg--CCGUUGCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.