miRNA display CGI


Results 41 - 60 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24101 3' -51.8 NC_005262.1 + 48252 0.7 0.72049
Target:  5'- -aCAagGCAAugauggggacGUAUGCCgGGCAGCGCg -3'
miRNA:   3'- uaGUagCGUUu---------CAUGCGG-CCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 47916 0.66 0.911301
Target:  5'- uGUUuUUGCAGAcgccGaGCGCCGGCGACa- -3'
miRNA:   3'- -UAGuAGCGUUU----CaUGCGGCCGUUGcg -5'
24101 3' -51.8 NC_005262.1 + 47893 0.67 0.849962
Target:  5'- -gCAUCGCGgcGcACGUCGcGCGcACGCg -3'
miRNA:   3'- uaGUAGCGUuuCaUGCGGC-CGU-UGCG- -5'
24101 3' -51.8 NC_005262.1 + 47061 0.7 0.709552
Target:  5'- -aCAUCGCAGAcccGUGCuGCCcGguGCGCa -3'
miRNA:   3'- uaGUAGCGUUU---CAUG-CGGcCguUGCG- -5'
24101 3' -51.8 NC_005262.1 + 47026 0.66 0.88123
Target:  5'- gAUCAUCGCGAucgcgaaauCGCaUGGCuGCGCc -3'
miRNA:   3'- -UAGUAGCGUUucau-----GCG-GCCGuUGCG- -5'
24101 3' -51.8 NC_005262.1 + 46747 0.66 0.904589
Target:  5'- gAUCgAUCGCcgccacgccgGucGUACaGgCGGCGACGCg -3'
miRNA:   3'- -UAG-UAGCG----------UuuCAUG-CgGCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 46453 0.66 0.911301
Target:  5'- gAUCuucUCGCGGAu--CGCCG-CGACGCg -3'
miRNA:   3'- -UAGu--AGCGUUUcauGCGGCcGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 45780 0.66 0.904589
Target:  5'- -gCAUCGCGgcGaAgGgCGGCGGCGUg -3'
miRNA:   3'- uaGUAGCGUuuCaUgCgGCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 45692 0.67 0.849962
Target:  5'- uUCGUgCGCAucGaGgGCCGGCAGCcgGCc -3'
miRNA:   3'- uAGUA-GCGUuuCaUgCGGCCGUUG--CG- -5'
24101 3' -51.8 NC_005262.1 + 44658 0.71 0.642676
Target:  5'- uUCuUCaagAAAG-ACGCCGGCGACGCg -3'
miRNA:   3'- uAGuAGcg-UUUCaUGCGGCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 44497 0.7 0.676312
Target:  5'- -gCAUCGCcGAGcACGUCGGCuGCGa -3'
miRNA:   3'- uaGUAGCGuUUCaUGCGGCCGuUGCg -5'
24101 3' -51.8 NC_005262.1 + 44241 0.66 0.89032
Target:  5'- -aCAUCGCGAgcgauGGcucGCGCCacuGGCuGACGCg -3'
miRNA:   3'- uaGUAGCGUU-----UCa--UGCGG---CCG-UUGCG- -5'
24101 3' -51.8 NC_005262.1 + 43844 0.75 0.39914
Target:  5'- -gCcgCGCGcggcGGUGCGCCGGCAggaccucgGCGCg -3'
miRNA:   3'- uaGuaGCGUu---UCAUGCGGCCGU--------UGCG- -5'
24101 3' -51.8 NC_005262.1 + 43662 0.66 0.911301
Target:  5'- --uGUCGagcuGGUGCGUCGGCAGgGg -3'
miRNA:   3'- uagUAGCguu-UCAUGCGGCCGUUgCg -5'
24101 3' -51.8 NC_005262.1 + 43608 0.75 0.39914
Target:  5'- -aUAUCGCGcAGGUGacgcuCGCCGGCAccgGCGCa -3'
miRNA:   3'- uaGUAGCGU-UUCAU-----GCGGCCGU---UGCG- -5'
24101 3' -51.8 NC_005262.1 + 43287 0.72 0.553275
Target:  5'- gGUCGUCGCGAGcgccGCGCCGauGguGCGCg -3'
miRNA:   3'- -UAGUAGCGUUUca--UGCGGC--CguUGCG- -5'
24101 3' -51.8 NC_005262.1 + 42919 0.77 0.337177
Target:  5'- cGUCGUCGCGucGU-CGuCCGGCGcGCGCg -3'
miRNA:   3'- -UAGUAGCGUuuCAuGC-GGCCGU-UGCG- -5'
24101 3' -51.8 NC_005262.1 + 42295 0.66 0.89032
Target:  5'- cUCG-CGCucGGUGCGCCacuGGU-ACGCa -3'
miRNA:   3'- uAGUaGCGuuUCAUGCGG---CCGuUGCG- -5'
24101 3' -51.8 NC_005262.1 + 41674 0.66 0.911301
Target:  5'- cGUCAUCGC------CGCCGGCAcCGg -3'
miRNA:   3'- -UAGUAGCGuuucauGCGGCCGUuGCg -5'
24101 3' -51.8 NC_005262.1 + 41550 0.66 0.904589
Target:  5'- cGUgAUgCGCAGgccGGccgGCGUgGGCGGCGCg -3'
miRNA:   3'- -UAgUA-GCGUU---UCa--UGCGgCCGUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.