miRNA display CGI


Results 61 - 80 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24101 3' -51.8 NC_005262.1 + 41417 0.67 0.858543
Target:  5'- gAUgAUCGCGAuccGCGCCGGaCAcccuccgcaccACGCg -3'
miRNA:   3'- -UAgUAGCGUUucaUGCGGCC-GU-----------UGCG- -5'
24101 3' -51.8 NC_005262.1 + 41405 0.72 0.586551
Target:  5'- uUCAUCGUcg---GCGCCGGCAccucguauGCGCc -3'
miRNA:   3'- uAGUAGCGuuucaUGCGGCCGU--------UGCG- -5'
24101 3' -51.8 NC_005262.1 + 40865 0.75 0.437668
Target:  5'- cUCG-CGCGGAGcaugGCGUCGGCgAGCGCg -3'
miRNA:   3'- uAGUaGCGUUUCa---UGCGGCCG-UUGCG- -5'
24101 3' -51.8 NC_005262.1 + 40863 0.74 0.467921
Target:  5'- cAUCAgcaCGCAAA--AUGCCGGCAGCGg -3'
miRNA:   3'- -UAGUa--GCGUUUcaUGCGGCCGUUGCg -5'
24101 3' -51.8 NC_005262.1 + 40536 0.66 0.896162
Target:  5'- cAUCGUCGCGgcGggcggcucuuacGCGCCGgGCAACa- -3'
miRNA:   3'- -UAGUAGCGUuuCa-----------UGCGGC-CGUUGcg -5'
24101 3' -51.8 NC_005262.1 + 40095 0.69 0.751648
Target:  5'- cGUgGUCGacc-GUGCGCCGGUAgacccacACGCg -3'
miRNA:   3'- -UAgUAGCguuuCAUGCGGCCGU-------UGCG- -5'
24101 3' -51.8 NC_005262.1 + 39396 0.66 0.911301
Target:  5'- cAUCAccuUCGCGGAcGUGCgcgccGCCGGUuuGGCGUc -3'
miRNA:   3'- -UAGU---AGCGUUU-CAUG-----CGGCCG--UUGCG- -5'
24101 3' -51.8 NC_005262.1 + 39247 0.68 0.822825
Target:  5'- gAUCA--GCAGGaucACGCCGGCGAuCGCg -3'
miRNA:   3'- -UAGUagCGUUUca-UGCGGCCGUU-GCG- -5'
24101 3' -51.8 NC_005262.1 + 39190 0.68 0.813347
Target:  5'- -aUAUCGUcuGGgAUGCCGGCAACu- -3'
miRNA:   3'- uaGUAGCGuuUCaUGCGGCCGUUGcg -5'
24101 3' -51.8 NC_005262.1 + 39131 0.73 0.499214
Target:  5'- uUUGUCGCucaacgACGCUGGCGACGUa -3'
miRNA:   3'- uAGUAGCGuuuca-UGCGGCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 38953 0.68 0.80367
Target:  5'- -aCuggCGCAGGGUgaucggcacgGCGCCGGCcGCGa -3'
miRNA:   3'- uaGua-GCGUUUCA----------UGCGGCCGuUGCg -5'
24101 3' -51.8 NC_005262.1 + 38832 0.67 0.866877
Target:  5'- cGUC-UCGCGugcucAGGaAgGCaCGGCAGCGCu -3'
miRNA:   3'- -UAGuAGCGU-----UUCaUgCG-GCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 37858 0.69 0.763202
Target:  5'- cUCGUUGCcggaAAAGUcgGCGUCGcGCGugGCg -3'
miRNA:   3'- uAGUAGCG----UUUCA--UGCGGC-CGUugCG- -5'
24101 3' -51.8 NC_005262.1 + 37806 0.7 0.676312
Target:  5'- -aCGUCGCGAAcGUGCccGCCGuGUAcuGCGCg -3'
miRNA:   3'- uaGUAGCGUUU-CAUG--CGGC-CGU--UGCG- -5'
24101 3' -51.8 NC_005262.1 + 37154 0.66 0.89032
Target:  5'- aGUCAg-GC--GGUGCGCCaGCuACGCg -3'
miRNA:   3'- -UAGUagCGuuUCAUGCGGcCGuUGCG- -5'
24101 3' -51.8 NC_005262.1 + 36414 0.66 0.882772
Target:  5'- aGUCcacguUCGCGGAG-GCGCCGaCGACGg -3'
miRNA:   3'- -UAGu----AGCGUUUCaUGCGGCcGUUGCg -5'
24101 3' -51.8 NC_005262.1 + 36260 0.72 0.575407
Target:  5'- gAUCGUCaccgauGCAGAugcGUggGCGCgCGGCGACGCg -3'
miRNA:   3'- -UAGUAG------CGUUU---CA--UGCG-GCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 35842 0.67 0.853423
Target:  5'- cGUCGgcgcCGCGAccgcccagauguuuGUGCG-CGGCGACGCg -3'
miRNA:   3'- -UAGUa---GCGUUu-------------CAUGCgGCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 35618 0.66 0.897594
Target:  5'- -gCGUUGCAGu---CGuCCGGCAACGg -3'
miRNA:   3'- uaGUAGCGUUucauGC-GGCCGUUGCg -5'
24101 3' -51.8 NC_005262.1 + 35496 0.68 0.826558
Target:  5'- gAUCAUgcgcacgcgcuugcgCGCAuAGgcgacaGCGCCGGCcguGACGCu -3'
miRNA:   3'- -UAGUA---------------GCGUuUCa-----UGCGGCCG---UUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.