Results 41 - 60 of 174 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24101 | 3' | -51.8 | NC_005262.1 | + | 60819 | 0.77 | 0.328918 |
Target: 5'- --uGUCGCAgGAGUuuGCGCCGGCcuACGCg -3' miRNA: 3'- uagUAGCGU-UUCA--UGCGGCCGu-UGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 27860 | 0.79 | 0.254567 |
Target: 5'- -gCGUCGCAAGG-ACGgCGGCAAgGCg -3' miRNA: 3'- uaGUAGCGUUUCaUGCgGCCGUUgCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 60668 | 0.8 | 0.228925 |
Target: 5'- cUCAUCGCGcucGGcAUGCUGGCGACGCu -3' miRNA: 3'- uAGUAGCGUu--UCaUGCGGCCGUUGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 63069 | 0.81 | 0.194584 |
Target: 5'- cGUCAUCGCGggcGAGUAUG-CGGCGGCGUg -3' miRNA: 3'- -UAGUAGCGU---UUCAUGCgGCCGUUGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 30815 | 0.84 | 0.117332 |
Target: 5'- -aCAUCGCAAacccGGUGCGCgucuCGGCGACGCg -3' miRNA: 3'- uaGUAGCGUU----UCAUGCG----GCCGUUGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 60545 | 0.74 | 0.488676 |
Target: 5'- uUCGacCGCAAGGgcacgcugACGCCGGCGcucgGCGCg -3' miRNA: 3'- uAGUa-GCGUUUCa-------UGCGGCCGU----UGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 39131 | 0.73 | 0.499214 |
Target: 5'- uUUGUCGCucaacgACGCUGGCGACGUa -3' miRNA: 3'- uAGUAGCGuuuca-UGCGGCCGUUGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 15690 | 0.7 | 0.709552 |
Target: 5'- uUCGUCGCcGAG-ACGgaCGaGCAGCGCu -3' miRNA: 3'- uAGUAGCGuUUCaUGCg-GC-CGUUGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 61445 | 0.7 | 0.709552 |
Target: 5'- -aCGUCGCGAAGaagGCGgcggaCGGCGaaGCGCu -3' miRNA: 3'- uaGUAGCGUUUCa--UGCg----GCCGU--UGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 37806 | 0.7 | 0.676312 |
Target: 5'- -aCGUCGCGAAcGUGCccGCCGuGUAcuGCGCg -3' miRNA: 3'- uaGUAGCGUUU-CAUG--CGGC-CGU--UGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 44658 | 0.71 | 0.642676 |
Target: 5'- uUCuUCaagAAAG-ACGCCGGCGACGCg -3' miRNA: 3'- uAGuAGcg-UUUCaUGCGGCCGUUGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 11564 | 0.72 | 0.586551 |
Target: 5'- cAUCAcgCGCGcuGcUAUGCCGGCGGCGg -3' miRNA: 3'- -UAGUa-GCGUuuC-AUGCGGCCGUUGCg -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 41405 | 0.72 | 0.586551 |
Target: 5'- uUCAUCGUcg---GCGCCGGCAccucguauGCGCc -3' miRNA: 3'- uAGUAGCGuuucaUGCGGCCGU--------UGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 36260 | 0.72 | 0.575407 |
Target: 5'- gAUCGUCaccgauGCAGAugcGUggGCGCgCGGCGACGCg -3' miRNA: 3'- -UAGUAG------CGUUU---CA--UGCG-GCCGUUGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 17547 | 0.72 | 0.575407 |
Target: 5'- gGUCGcgCGCGAGGcgGCaGCCgcGGCGGCGCg -3' miRNA: 3'- -UAGUa-GCGUUUCa-UG-CGG--CCGUUGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 11638 | 0.72 | 0.575407 |
Target: 5'- -cCAUCgGCucGGcgGCGCCGGCGucGCGCu -3' miRNA: 3'- uaGUAG-CGuuUCa-UGCGGCCGU--UGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 35213 | 0.72 | 0.553275 |
Target: 5'- -aCGUcCGCAAGGaUGCggagGUCGGCGGCGCg -3' miRNA: 3'- uaGUA-GCGUUUC-AUG----CGGCCGUUGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 17604 | 0.73 | 0.542302 |
Target: 5'- -gCAgcgCGCGGAGcuggaGCGCCaGCAGCGCg -3' miRNA: 3'- uaGUa--GCGUUUCa----UGCGGcCGUUGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 10976 | 0.73 | 0.520584 |
Target: 5'- uGUCGgcgCGCcGGGaACGCCGGUcGCGCu -3' miRNA: 3'- -UAGUa--GCGuUUCaUGCGGCCGuUGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 33794 | 0.73 | 0.499214 |
Target: 5'- cUCAUCGCuc---GCGCgGGCAACGUc -3' miRNA: 3'- uAGUAGCGuuucaUGCGgCCGUUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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