miRNA display CGI


Results 61 - 80 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24101 3' -51.8 NC_005262.1 + 35213 0.72 0.553275
Target:  5'- -aCGUcCGCAAGGaUGCggagGUCGGCGGCGCg -3'
miRNA:   3'- uaGUA-GCGUUUC-AUG----CGGCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 11638 0.72 0.575407
Target:  5'- -cCAUCgGCucGGcgGCGCCGGCGucGCGCu -3'
miRNA:   3'- uaGUAG-CGuuUCa-UGCGGCCGU--UGCG- -5'
24101 3' -51.8 NC_005262.1 + 53973 0.7 0.709552
Target:  5'- --aGUCGCucAAG-ACGCuCGGCGAUGCc -3'
miRNA:   3'- uagUAGCGu-UUCaUGCG-GCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 30640 0.7 0.72049
Target:  5'- cUCG--GCAAGGUgcccGCGUCGGaCAACGCg -3'
miRNA:   3'- uAGUagCGUUUCA----UGCGGCC-GUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 48252 0.7 0.72049
Target:  5'- -aCAagGCAAugauggggacGUAUGCCgGGCAGCGCg -3'
miRNA:   3'- uaGUagCGUUu---------CAUGCGG-CCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 52420 0.7 0.72049
Target:  5'- --gAUCGCGGAG-GCG-CGGCAaaGCGCa -3'
miRNA:   3'- uagUAGCGUUUCaUGCgGCCGU--UGCG- -5'
24101 3' -51.8 NC_005262.1 + 24214 0.69 0.752704
Target:  5'- ----cCGCGAcGcUGCGCCGGCA-CGCc -3'
miRNA:   3'- uaguaGCGUUuC-AUGCGGCCGUuGCG- -5'
24101 3' -51.8 NC_005262.1 + 25912 0.69 0.763202
Target:  5'- -gCAgcgCGCAuGGUACGUCGccacgcGCGACGCc -3'
miRNA:   3'- uaGUa--GCGUuUCAUGCGGC------CGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 56953 0.68 0.793806
Target:  5'- gAUCcgCGCGggcGAGUuCGCgGGCGugGUc -3'
miRNA:   3'- -UAGuaGCGU---UUCAuGCGgCCGUugCG- -5'
24101 3' -51.8 NC_005262.1 + 61915 0.68 0.793806
Target:  5'- -aCGcCGCAGGGcUGCGCCGGCu-CGa -3'
miRNA:   3'- uaGUaGCGUUUC-AUGCGGCCGuuGCg -5'
24101 3' -51.8 NC_005262.1 + 51840 0.7 0.709552
Target:  5'- -aCGUgCGCGAAGUGCugaaGCgCGGCGcCGCg -3'
miRNA:   3'- uaGUA-GCGUUUCAUG----CG-GCCGUuGCG- -5'
24101 3' -51.8 NC_005262.1 + 34575 0.7 0.709552
Target:  5'- -aCGUCGUgu-GcGCGCCGuGCGGCGCc -3'
miRNA:   3'- uaGUAGCGuuuCaUGCGGC-CGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 17547 0.72 0.575407
Target:  5'- gGUCGcgCGCGAGGcgGCaGCCgcGGCGGCGCg -3'
miRNA:   3'- -UAGUa-GCGUUUCa-UG-CGG--CCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 36260 0.72 0.575407
Target:  5'- gAUCGUCaccgauGCAGAugcGUggGCGCgCGGCGACGCg -3'
miRNA:   3'- -UAGUAG------CGUUU---CA--UGCG-GCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 41405 0.72 0.586551
Target:  5'- uUCAUCGUcg---GCGCCGGCAccucguauGCGCc -3'
miRNA:   3'- uAGUAGCGuuucaUGCGGCCGU--------UGCG- -5'
24101 3' -51.8 NC_005262.1 + 11564 0.72 0.586551
Target:  5'- cAUCAcgCGCGcuGcUAUGCCGGCGGCGg -3'
miRNA:   3'- -UAGUa-GCGUuuC-AUGCGGCCGUUGCg -5'
24101 3' -51.8 NC_005262.1 + 44658 0.71 0.642676
Target:  5'- uUCuUCaagAAAG-ACGCCGGCGACGCg -3'
miRNA:   3'- uAGuAGcg-UUUCaUGCGGCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 37806 0.7 0.676312
Target:  5'- -aCGUCGCGAAcGUGCccGCCGuGUAcuGCGCg -3'
miRNA:   3'- uaGUAGCGUUU-CAUG--CGGC-CGU--UGCG- -5'
24101 3' -51.8 NC_005262.1 + 61445 0.7 0.709552
Target:  5'- -aCGUCGCGAAGaagGCGgcggaCGGCGaaGCGCu -3'
miRNA:   3'- uaGUAGCGUUUCa--UGCg----GCCGU--UGCG- -5'
24101 3' -51.8 NC_005262.1 + 15690 0.7 0.709552
Target:  5'- uUCGUCGCcGAG-ACGgaCGaGCAGCGCu -3'
miRNA:   3'- uAGUAGCGuUUCaUGCg-GC-CGUUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.