miRNA display CGI


Results 21 - 40 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24101 3' -51.8 NC_005262.1 + 36414 0.66 0.882772
Target:  5'- aGUCcacguUCGCGGAG-GCGCCGaCGACGg -3'
miRNA:   3'- -UAGu----AGCGUUUCaUGCGGCcGUUGCg -5'
24101 3' -51.8 NC_005262.1 + 56316 0.66 0.89032
Target:  5'- uUCAggacCGCGGauAGccCGCUGGCGugGCa -3'
miRNA:   3'- uAGUa---GCGUU--UCauGCGGCCGUugCG- -5'
24101 3' -51.8 NC_005262.1 + 22307 0.66 0.907308
Target:  5'- --gAUCGguGAcggugugauuGUGCGCCGGCAucugggcugcggucaGCGUa -3'
miRNA:   3'- uagUAGCguUU----------CAUGCGGCCGU---------------UGCG- -5'
24101 3' -51.8 NC_005262.1 + 17070 0.66 0.911301
Target:  5'- gAUCcgGUCGUgccGGAuUGCGCCGGCuuguccacuGCGCg -3'
miRNA:   3'- -UAG--UAGCG---UUUcAUGCGGCCGu--------UGCG- -5'
24101 3' -51.8 NC_005262.1 + 5977 0.67 0.849962
Target:  5'- aAUgAUCGUgc-GUA-GCCGGCAAUGCc -3'
miRNA:   3'- -UAgUAGCGuuuCAUgCGGCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 23550 0.66 0.874955
Target:  5'- uGUCAUUGC----UGCGCgCGGUcACGCg -3'
miRNA:   3'- -UAGUAGCGuuucAUGCG-GCCGuUGCG- -5'
24101 3' -51.8 NC_005262.1 + 37154 0.66 0.89032
Target:  5'- aGUCAg-GC--GGUGCGCCaGCuACGCg -3'
miRNA:   3'- -UAGUagCGuuUCAUGCGGcCGuUGCG- -5'
24101 3' -51.8 NC_005262.1 + 39396 0.66 0.911301
Target:  5'- cAUCAccuUCGCGGAcGUGCgcgccGCCGGUuuGGCGUc -3'
miRNA:   3'- -UAGU---AGCGUUU-CAUG-----CGGCCG--UUGCG- -5'
24101 3' -51.8 NC_005262.1 + 29292 0.66 0.874955
Target:  5'- cGUCGucUCGCAGaAGUcgcGCGCC-GCcGCGCg -3'
miRNA:   3'- -UAGU--AGCGUU-UCA---UGCGGcCGuUGCG- -5'
24101 3' -51.8 NC_005262.1 + 46453 0.66 0.911301
Target:  5'- gAUCuucUCGCGGAu--CGCCG-CGACGCg -3'
miRNA:   3'- -UAGu--AGCGUUUcauGCGGCcGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 14439 0.66 0.89032
Target:  5'- -gCGUCGCcGAGU-CGUCaGCgAGCGCg -3'
miRNA:   3'- uaGUAGCGuUUCAuGCGGcCG-UUGCG- -5'
24101 3' -51.8 NC_005262.1 + 47026 0.66 0.88123
Target:  5'- gAUCAUCGCGAucgcgaaauCGCaUGGCuGCGCc -3'
miRNA:   3'- -UAGUAGCGUUucau-----GCG-GCCGuUGCG- -5'
24101 3' -51.8 NC_005262.1 + 41550 0.66 0.904589
Target:  5'- cGUgAUgCGCAGgccGGccgGCGUgGGCGGCGCg -3'
miRNA:   3'- -UAgUA-GCGUU---UCa--UGCGgCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 63651 0.66 0.904589
Target:  5'- --uGUCGCu--GU-CuCCGGCGACGCu -3'
miRNA:   3'- uagUAGCGuuuCAuGcGGCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 2084 0.66 0.911301
Target:  5'- -----aGCAGAGcGCGCCGaGCGaacccgGCGCg -3'
miRNA:   3'- uaguagCGUUUCaUGCGGC-CGU------UGCG- -5'
24101 3' -51.8 NC_005262.1 + 59243 0.66 0.911301
Target:  5'- ----gCGCGAGaUGCGCCGcGC-GCGCa -3'
miRNA:   3'- uaguaGCGUUUcAUGCGGC-CGuUGCG- -5'
24101 3' -51.8 NC_005262.1 + 11556 0.67 0.841142
Target:  5'- -gCAUUGUAGAcgAUGCCGauuGCGACGCa -3'
miRNA:   3'- uaGUAGCGUUUcaUGCGGC---CGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 30763 0.67 0.849962
Target:  5'- -aCGUCGgGcGGUACGUCaGCAucagGCGCa -3'
miRNA:   3'- uaGUAGCgUuUCAUGCGGcCGU----UGCG- -5'
24101 3' -51.8 NC_005262.1 + 41417 0.67 0.858543
Target:  5'- gAUgAUCGCGAuccGCGCCGGaCAcccuccgcaccACGCg -3'
miRNA:   3'- -UAgUAGCGUUucaUGCGGCC-GU-----------UGCG- -5'
24101 3' -51.8 NC_005262.1 + 48649 0.67 0.866877
Target:  5'- cAUCcgCGCcGAcucgACGCCGGCcgcGAUGCg -3'
miRNA:   3'- -UAGuaGCGuUUca--UGCGGCCG---UUGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.