Results 41 - 60 of 174 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24101 | 3' | -51.8 | NC_005262.1 | + | 47893 | 0.67 | 0.849962 |
Target: 5'- -gCAUCGCGgcGcACGUCGcGCGcACGCg -3' miRNA: 3'- uaGUAGCGUuuCaUGCGGC-CGU-UGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 37154 | 0.66 | 0.89032 |
Target: 5'- aGUCAg-GC--GGUGCGCCaGCuACGCg -3' miRNA: 3'- -UAGUagCGuuUCAUGCGGcCGuUGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 39396 | 0.66 | 0.911301 |
Target: 5'- cAUCAccuUCGCGGAcGUGCgcgccGCCGGUuuGGCGUc -3' miRNA: 3'- -UAGU---AGCGUUU-CAUG-----CGGCCG--UUGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 8847 | 0.67 | 0.855994 |
Target: 5'- gGUUuUCGCGcAGGUugaagcgcagcgacACGcCCGGCAGCGUc -3' miRNA: 3'- -UAGuAGCGU-UUCA--------------UGC-GGCCGUUGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 46453 | 0.66 | 0.911301 |
Target: 5'- gAUCuucUCGCGGAu--CGCCG-CGACGCg -3' miRNA: 3'- -UAGu--AGCGUUUcauGCGGCcGUUGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 8935 | 0.69 | 0.752704 |
Target: 5'- cUCGUUGUAGuAGUugacgaGCCGGuCGGCGCg -3' miRNA: 3'- uAGUAGCGUU-UCAug----CGGCC-GUUGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 59243 | 0.66 | 0.911301 |
Target: 5'- ----gCGCGAGaUGCGCCGcGC-GCGCa -3' miRNA: 3'- uaguaGCGUUUcAUGCGGC-CGuUGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 5582 | 0.69 | 0.763202 |
Target: 5'- uUCGUgGUAcGGgcgGCGCCgcucuccgcaGGCGACGCg -3' miRNA: 3'- uAGUAgCGUuUCa--UGCGG----------CCGUUGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 5010 | 0.68 | 0.783765 |
Target: 5'- cGUCGUCGaccca-GCGCCGG-AACGCg -3' miRNA: 3'- -UAGUAGCguuucaUGCGGCCgUUGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 16898 | 0.68 | 0.813347 |
Target: 5'- gAUCGcccugCGCGAGGUACGUuucagcgaucuuCGGCA-CGCc -3' miRNA: 3'- -UAGUa----GCGUUUCAUGCG------------GCCGUuGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 51312 | 0.68 | 0.822825 |
Target: 5'- ---uUCGCucacugcGUAUGCCGcGCGGCGCc -3' miRNA: 3'- uaguAGCGuuu----CAUGCGGC-CGUUGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 11556 | 0.67 | 0.841142 |
Target: 5'- -gCAUUGUAGAcgAUGCCGauuGCGACGCa -3' miRNA: 3'- uaGUAGCGUUUcaUGCGGC---CGUUGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 30763 | 0.67 | 0.849962 |
Target: 5'- -aCGUCGgGcGGUACGUCaGCAucagGCGCa -3' miRNA: 3'- uaGUAGCgUuUCAUGCGGcCGU----UGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 32165 | 0.67 | 0.866877 |
Target: 5'- -gCAUCGCc--GUAgGUCGGCuugccGCGCa -3' miRNA: 3'- uaGUAGCGuuuCAUgCGGCCGu----UGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 29292 | 0.66 | 0.874955 |
Target: 5'- cGUCGucUCGCAGaAGUcgcGCGCC-GCcGCGCg -3' miRNA: 3'- -UAGU--AGCGUU-UCA---UGCGGcCGuUGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 36414 | 0.66 | 0.882772 |
Target: 5'- aGUCcacguUCGCGGAG-GCGCCGaCGACGg -3' miRNA: 3'- -UAGu----AGCGUUUCaUGCGGCcGUUGCg -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 56316 | 0.66 | 0.89032 |
Target: 5'- uUCAggacCGCGGauAGccCGCUGGCGugGCa -3' miRNA: 3'- uAGUa---GCGUU--UCauGCGGCCGUugCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 41550 | 0.66 | 0.904589 |
Target: 5'- cGUgAUgCGCAGgccGGccgGCGUgGGCGGCGCg -3' miRNA: 3'- -UAgUA-GCGUU---UCa--UGCGgCCGUUGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 63651 | 0.66 | 0.904589 |
Target: 5'- --uGUCGCu--GU-CuCCGGCGACGCu -3' miRNA: 3'- uagUAGCGuuuCAuGcGGCCGUUGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 2084 | 0.66 | 0.911301 |
Target: 5'- -----aGCAGAGcGCGCCGaGCGaacccgGCGCg -3' miRNA: 3'- uaguagCGUUUCaUGCGGC-CGU------UGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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