miRNA display CGI


Results 61 - 80 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24101 3' -51.8 NC_005262.1 + 30763 0.67 0.849962
Target:  5'- -aCGUCGgGcGGUACGUCaGCAucagGCGCa -3'
miRNA:   3'- uaGUAGCgUuUCAUGCGGcCGU----UGCG- -5'
24101 3' -51.8 NC_005262.1 + 35496 0.68 0.826558
Target:  5'- gAUCAUgcgcacgcgcuugcgCGCAuAGgcgacaGCGCCGGCcguGACGCu -3'
miRNA:   3'- -UAGUA---------------GCGUuUCa-----UGCGGCCG---UUGCG- -5'
24101 3' -51.8 NC_005262.1 + 43662 0.66 0.911301
Target:  5'- --uGUCGagcuGGUGCGUCGGCAGgGg -3'
miRNA:   3'- uagUAGCguu-UCAUGCGGCCGUUgCg -5'
24101 3' -51.8 NC_005262.1 + 52639 0.66 0.910643
Target:  5'- cGUUGUCGCAGGgccgcccGUGCGaCCGGagccACGCc -3'
miRNA:   3'- -UAGUAGCGUUU-------CAUGC-GGCCgu--UGCG- -5'
24101 3' -51.8 NC_005262.1 + 58077 0.66 0.904589
Target:  5'- -cCAagGuCAAGGUGCGCgaCGGCAACa- -3'
miRNA:   3'- uaGUagC-GUUUCAUGCG--GCCGUUGcg -5'
24101 3' -51.8 NC_005262.1 + 30569 0.66 0.897594
Target:  5'- -gCGUCGauguugACGUCGGCAAUGUg -3'
miRNA:   3'- uaGUAGCguuucaUGCGGCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 42295 0.66 0.89032
Target:  5'- cUCG-CGCucGGUGCGCCacuGGU-ACGCa -3'
miRNA:   3'- uAGUaGCGuuUCAUGCGG---CCGuUGCG- -5'
24101 3' -51.8 NC_005262.1 + 47026 0.66 0.88123
Target:  5'- gAUCAUCGCGAucgcgaaauCGCaUGGCuGCGCc -3'
miRNA:   3'- -UAGUAGCGUUucau-----GCG-GCCGuUGCG- -5'
24101 3' -51.8 NC_005262.1 + 23550 0.66 0.874955
Target:  5'- uGUCAUUGC----UGCGCgCGGUcACGCg -3'
miRNA:   3'- -UAGUAGCGuuucAUGCG-GCCGuUGCG- -5'
24101 3' -51.8 NC_005262.1 + 34060 0.67 0.866877
Target:  5'- -----aGCcGGGaGCGCCGGCuGCGCu -3'
miRNA:   3'- uaguagCGuUUCaUGCGGCCGuUGCG- -5'
24101 3' -51.8 NC_005262.1 + 4641 0.72 0.575407
Target:  5'- uUCuUCGCGuccuccaUGCGCgCGGCGACGCg -3'
miRNA:   3'- uAGuAGCGUuuc----AUGCG-GCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 28593 0.71 0.642676
Target:  5'- cAUCcUUGCGGAcGUAgGCUGGCcACGCg -3'
miRNA:   3'- -UAGuAGCGUUU-CAUgCGGCCGuUGCG- -5'
24101 3' -51.8 NC_005262.1 + 33714 0.68 0.821886
Target:  5'- uGUCGUCGCccuucuugccggcGucGUcguCGCCGGCAGCa- -3'
miRNA:   3'- -UAGUAGCG-------------UuuCAu--GCGGCCGUUGcg -5'
24101 3' -51.8 NC_005262.1 + 38953 0.68 0.80367
Target:  5'- -aCuggCGCAGGGUgaucggcacgGCGCCGGCcGCGa -3'
miRNA:   3'- uaGua-GCGUUUCA----------UGCGGCCGuUGCg -5'
24101 3' -51.8 NC_005262.1 + 5582 0.69 0.763202
Target:  5'- uUCGUgGUAcGGgcgGCGCCgcucuccgcaGGCGACGCg -3'
miRNA:   3'- uAGUAgCGUuUCa--UGCGG----------CCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 8935 0.69 0.752704
Target:  5'- cUCGUUGUAGuAGUugacgaGCCGGuCGGCGCg -3'
miRNA:   3'- uAGUAGCGUU-UCAug----CGGCC-GUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 1989 0.69 0.730256
Target:  5'- cUCGagCGCGAGGcaUGCGCCGcGCAggcgaaaACGCg -3'
miRNA:   3'- uAGUa-GCGUUUC--AUGCGGC-CGU-------UGCG- -5'
24101 3' -51.8 NC_005262.1 + 28534 0.7 0.709552
Target:  5'- cGUgGUCGUGccGUuCGCCGGgGGCGCc -3'
miRNA:   3'- -UAgUAGCGUuuCAuGCGGCCgUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 57026 0.7 0.684115
Target:  5'- gAUCAUCgGCAucGUGC-CCGGCcacgagcacaacgaGGCGCg -3'
miRNA:   3'- -UAGUAG-CGUuuCAUGcGGCCG--------------UUGCG- -5'
24101 3' -51.8 NC_005262.1 + 16304 0.7 0.675195
Target:  5'- aGUCGUCG--GAGUA-GCCGGCGuucuucaGCGCg -3'
miRNA:   3'- -UAGUAGCguUUCAUgCGGCCGU-------UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.