miRNA display CGI


Results 81 - 100 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24101 3' -51.8 NC_005262.1 + 10208 0.7 0.709552
Target:  5'- cUCGUUuGCGcGGUACaugcuGCCGGuCAGCGCg -3'
miRNA:   3'- uAGUAG-CGUuUCAUG-----CGGCC-GUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 47061 0.7 0.709552
Target:  5'- -aCAUCGCAGAcccGUGCuGCCcGguGCGCa -3'
miRNA:   3'- uaGUAGCGUUU---CAUG-CGGcCguUGCG- -5'
24101 3' -51.8 NC_005262.1 + 57026 0.7 0.684115
Target:  5'- gAUCAUCgGCAucGUGC-CCGGCcacgagcacaacgaGGCGCg -3'
miRNA:   3'- -UAGUAG-CGUuuCAUGcGGCCG--------------UUGCG- -5'
24101 3' -51.8 NC_005262.1 + 30869 0.7 0.676312
Target:  5'- --gAUCGUGAAG-GCGCUGGCGagcgucGCGCg -3'
miRNA:   3'- uagUAGCGUUUCaUGCGGCCGU------UGCG- -5'
24101 3' -51.8 NC_005262.1 + 16898 0.68 0.813347
Target:  5'- gAUCGcccugCGCGAGGUACGUuucagcgaucuuCGGCA-CGCc -3'
miRNA:   3'- -UAGUa----GCGUUUCAUGCG------------GCCGUuGCG- -5'
24101 3' -51.8 NC_005262.1 + 47893 0.67 0.849962
Target:  5'- -gCAUCGCGgcGcACGUCGcGCGcACGCg -3'
miRNA:   3'- uaGUAGCGUuuCaUGCGGC-CGU-UGCG- -5'
24101 3' -51.8 NC_005262.1 + 21053 0.68 0.822825
Target:  5'- gAUCGUCGUGccGUagGCGCCGagcGCGACGa -3'
miRNA:   3'- -UAGUAGCGUuuCA--UGCGGC---CGUUGCg -5'
24101 3' -51.8 NC_005262.1 + 47026 0.66 0.88123
Target:  5'- gAUCAUCGCGAucgcgaaauCGCaUGGCuGCGCc -3'
miRNA:   3'- -UAGUAGCGUUucau-----GCG-GCCGuUGCG- -5'
24101 3' -51.8 NC_005262.1 + 29292 0.66 0.874955
Target:  5'- cGUCGucUCGCAGaAGUcgcGCGCC-GCcGCGCg -3'
miRNA:   3'- -UAGU--AGCGUU-UCA---UGCGGcCGuUGCG- -5'
24101 3' -51.8 NC_005262.1 + 11556 0.67 0.841142
Target:  5'- -gCAUUGUAGAcgAUGCCGauuGCGACGCa -3'
miRNA:   3'- uaGUAGCGUUUcaUGCGGC---CGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 34060 0.67 0.866877
Target:  5'- -----aGCcGGGaGCGCCGGCuGCGCu -3'
miRNA:   3'- uaguagCGuUUCaUGCGGCCGuUGCG- -5'
24101 3' -51.8 NC_005262.1 + 15690 0.7 0.709552
Target:  5'- uUCGUCGCcGAG-ACGgaCGaGCAGCGCu -3'
miRNA:   3'- uAGUAGCGuUUCaUGCg-GC-CGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 34575 0.7 0.709552
Target:  5'- -aCGUCGUgu-GcGCGCCGuGCGGCGCc -3'
miRNA:   3'- uaGUAGCGuuuCaUGCGGC-CGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 51840 0.7 0.709552
Target:  5'- -aCGUgCGCGAAGUGCugaaGCgCGGCGcCGCg -3'
miRNA:   3'- uaGUA-GCGUUUCAUG----CG-GCCGUuGCG- -5'
24101 3' -51.8 NC_005262.1 + 76 0.66 0.874955
Target:  5'- ---cUCGCGAAGaa-GUCGGCcGCGCc -3'
miRNA:   3'- uaguAGCGUUUCaugCGGCCGuUGCG- -5'
24101 3' -51.8 NC_005262.1 + 30142 0.67 0.857696
Target:  5'- cUgGUCGcCGAA--GCGCCGGCGgaugccgACGCg -3'
miRNA:   3'- uAgUAGC-GUUUcaUGCGGCCGU-------UGCG- -5'
24101 3' -51.8 NC_005262.1 + 17454 0.67 0.861906
Target:  5'- gAUCAcguucgaggacuUCGCcGAGUuccaggacgaagcgcGCGCCGcgcGCGACGCg -3'
miRNA:   3'- -UAGU------------AGCGuUUCA---------------UGCGGC---CGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 38832 0.67 0.866877
Target:  5'- cGUC-UCGCGugcucAGGaAgGCaCGGCAGCGCu -3'
miRNA:   3'- -UAGuAGCGU-----UUCaUgCG-GCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 55053 0.67 0.866877
Target:  5'- gAUgAUCGCGAcgggcauggaGGaGCGCCGGCuGgGCc -3'
miRNA:   3'- -UAgUAGCGUU----------UCaUGCGGCCGuUgCG- -5'
24101 3' -51.8 NC_005262.1 + 60545 0.74 0.488676
Target:  5'- uUCGacCGCAAGGgcacgcugACGCCGGCGcucgGCGCg -3'
miRNA:   3'- uAGUa-GCGUUUCa-------UGCGGCCGU----UGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.