Results 101 - 120 of 174 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24101 | 3' | -51.8 | NC_005262.1 | + | 61700 | 0.67 | 0.866877 |
Target: 5'- gAUCAgggCGCGccGGGUuCGCuCGGC-GCGCu -3' miRNA: 3'- -UAGUa--GCGU--UUCAuGCG-GCCGuUGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 30142 | 0.67 | 0.857696 |
Target: 5'- cUgGUCGcCGAA--GCGCCGGCGgaugccgACGCg -3' miRNA: 3'- uAgUAGC-GUUUcaUGCGGCCGU-------UGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 38832 | 0.67 | 0.866877 |
Target: 5'- cGUC-UCGCGugcucAGGaAgGCaCGGCAGCGCu -3' miRNA: 3'- -UAGuAGCGU-----UUCaUgCG-GCCGUUGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 17454 | 0.67 | 0.861906 |
Target: 5'- gAUCAcguucgaggacuUCGCcGAGUuccaggacgaagcgcGCGCCGcgcGCGACGCg -3' miRNA: 3'- -UAGU------------AGCGuUUCA---------------UGCGGC---CGUUGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 45692 | 0.67 | 0.849962 |
Target: 5'- uUCGUgCGCAucGaGgGCCGGCAGCcgGCc -3' miRNA: 3'- uAGUA-GCGUuuCaUgCGGCCGUUG--CG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 6439 | 0.67 | 0.847341 |
Target: 5'- cGUCcuUCGUguAGUucggcuccggcgagACGCCGGCAucgACGCg -3' miRNA: 3'- -UAGu-AGCGuuUCA--------------UGCGGCCGU---UGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 55053 | 0.67 | 0.866877 |
Target: 5'- gAUgAUCGCGAcgggcauggaGGaGCGCCGGCuGgGCc -3' miRNA: 3'- -UAgUAGCGUU----------UCaUGCGGCCGuUgCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 51840 | 0.7 | 0.709552 |
Target: 5'- -aCGUgCGCGAAGUGCugaaGCgCGGCGcCGCg -3' miRNA: 3'- uaGUA-GCGUUUCAUG----CG-GCCGUuGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 34575 | 0.7 | 0.709552 |
Target: 5'- -aCGUCGUgu-GcGCGCCGuGCGGCGCc -3' miRNA: 3'- uaGUAGCGuuuCaUGCGGC-CGUUGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 15690 | 0.7 | 0.709552 |
Target: 5'- uUCGUCGCcGAG-ACGgaCGaGCAGCGCu -3' miRNA: 3'- uAGUAGCGuUUCaUGCg-GC-CGUUGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 61445 | 0.7 | 0.709552 |
Target: 5'- -aCGUCGCGAAGaagGCGgcggaCGGCGaaGCGCu -3' miRNA: 3'- uaGUAGCGUUUCa--UGCg----GCCGU--UGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 37806 | 0.7 | 0.676312 |
Target: 5'- -aCGUCGCGAAcGUGCccGCCGuGUAcuGCGCg -3' miRNA: 3'- uaGUAGCGUUU-CAUG--CGGC-CGU--UGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 44658 | 0.71 | 0.642676 |
Target: 5'- uUCuUCaagAAAG-ACGCCGGCGACGCg -3' miRNA: 3'- uAGuAGcg-UUUCaUGCGGCCGUUGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 11564 | 0.72 | 0.586551 |
Target: 5'- cAUCAcgCGCGcuGcUAUGCCGGCGGCGg -3' miRNA: 3'- -UAGUa-GCGUuuC-AUGCGGCCGUUGCg -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 41405 | 0.72 | 0.586551 |
Target: 5'- uUCAUCGUcg---GCGCCGGCAccucguauGCGCc -3' miRNA: 3'- uAGUAGCGuuucaUGCGGCCGU--------UGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 24802 | 0.68 | 0.821886 |
Target: 5'- -aCAUCGCGAAGggcaaGCGCgagcucgcgaucgCGGcCGGCGCc -3' miRNA: 3'- uaGUAGCGUUUCa----UGCG-------------GCC-GUUGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 58857 | 0.68 | 0.822825 |
Target: 5'- --gAUCgGCGAcGUcACGCCGGCGcagcccGCGCg -3' miRNA: 3'- uagUAG-CGUUuCA-UGCGGCCGU------UGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 15158 | 0.68 | 0.822825 |
Target: 5'- aGUCggCGCGGAuGUugGaCGGCAcgcaGCGCu -3' miRNA: 3'- -UAGuaGCGUUU-CAugCgGCCGU----UGCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 31706 | 0.67 | 0.838451 |
Target: 5'- -gCAUCGaCcAAGUGCgucacucgguuucgGCCGGCGGuCGCa -3' miRNA: 3'- uaGUAGC-GuUUCAUG--------------CGGCCGUU-GCG- -5' |
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24101 | 3' | -51.8 | NC_005262.1 | + | 48472 | 0.67 | 0.841142 |
Target: 5'- --gAUCGCGAGccgcGUGgGCacgGGCGGCGCg -3' miRNA: 3'- uagUAGCGUUU----CAUgCGg--CCGUUGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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