miRNA display CGI


Results 21 - 40 of 174 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24101 3' -51.8 NC_005262.1 + 58077 0.66 0.904589
Target:  5'- -cCAagGuCAAGGUGCGCgaCGGCAACa- -3'
miRNA:   3'- uaGUagC-GUUUCAUGCG--GCCGUUGcg -5'
24101 3' -51.8 NC_005262.1 + 63651 0.66 0.904589
Target:  5'- --uGUCGCu--GU-CuCCGGCGACGCu -3'
miRNA:   3'- uagUAGCGuuuCAuGcGGCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 52125 0.66 0.904589
Target:  5'- -gCG-CGCGAAGcucUGCCGGcCAGCGUg -3'
miRNA:   3'- uaGUaGCGUUUCau-GCGGCC-GUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 41550 0.66 0.904589
Target:  5'- cGUgAUgCGCAGgccGGccgGCGUgGGCGGCGCg -3'
miRNA:   3'- -UAgUA-GCGUU---UCa--UGCGgCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 35618 0.66 0.897594
Target:  5'- -gCGUUGCAGu---CGuCCGGCAACGg -3'
miRNA:   3'- uaGUAGCGUUucauGC-GGCCGUUGCg -5'
24101 3' -51.8 NC_005262.1 + 33619 0.66 0.897594
Target:  5'- -aCGUCGCAGGaaaaGCCGcCGGCGCa -3'
miRNA:   3'- uaGUAGCGUUUcaugCGGCcGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 30569 0.66 0.897594
Target:  5'- -gCGUCGauguugACGUCGGCAAUGUg -3'
miRNA:   3'- uaGUAGCguuucaUGCGGCCGUUGCG- -5'
24101 3' -51.8 NC_005262.1 + 26576 0.66 0.897594
Target:  5'- aGUUcgCGCAGGcaUACGCUGGCGGCc- -3'
miRNA:   3'- -UAGuaGCGUUUc-AUGCGGCCGUUGcg -5'
24101 3' -51.8 NC_005262.1 + 40536 0.66 0.896162
Target:  5'- cAUCGUCGCGgcGggcggcucuuacGCGCCGgGCAACa- -3'
miRNA:   3'- -UAGUAGCGUuuCa-----------UGCGGC-CGUUGcg -5'
24101 3' -51.8 NC_005262.1 + 3720 0.66 0.89032
Target:  5'- cGUCAgCGCGuc--GCGCgCGGCGuuGCGCa -3'
miRNA:   3'- -UAGUaGCGUuucaUGCG-GCCGU--UGCG- -5'
24101 3' -51.8 NC_005262.1 + 37154 0.66 0.89032
Target:  5'- aGUCAg-GC--GGUGCGCCaGCuACGCg -3'
miRNA:   3'- -UAGUagCGuuUCAUGCGGcCGuUGCG- -5'
24101 3' -51.8 NC_005262.1 + 4809 0.66 0.89032
Target:  5'- -gCcgCGUAGcgcuGGUuuCGCCGGCGcgACGCa -3'
miRNA:   3'- uaGuaGCGUU----UCAu-GCGGCCGU--UGCG- -5'
24101 3' -51.8 NC_005262.1 + 56316 0.66 0.89032
Target:  5'- uUCAggacCGCGGauAGccCGCUGGCGugGCa -3'
miRNA:   3'- uAGUa---GCGUU--UCauGCGGCCGUugCG- -5'
24101 3' -51.8 NC_005262.1 + 44241 0.66 0.89032
Target:  5'- -aCAUCGCGAgcgauGGcucGCGCCacuGGCuGACGCg -3'
miRNA:   3'- uaGUAGCGUU-----UCa--UGCGG---CCG-UUGCG- -5'
24101 3' -51.8 NC_005262.1 + 42295 0.66 0.89032
Target:  5'- cUCG-CGCucGGUGCGCCacuGGU-ACGCa -3'
miRNA:   3'- uAGUaGCGuuUCAUGCGG---CCGuUGCG- -5'
24101 3' -51.8 NC_005262.1 + 14439 0.66 0.89032
Target:  5'- -gCGUCGCcGAGU-CGUCaGCgAGCGCg -3'
miRNA:   3'- uaGUAGCGuUUCAuGCGGcCG-UUGCG- -5'
24101 3' -51.8 NC_005262.1 + 8761 0.66 0.889578
Target:  5'- gAUCAUCGUGAAcGUcuugcccGCGCCGaccGCGuGCGCg -3'
miRNA:   3'- -UAGUAGCGUUU-CA-------UGCGGC---CGU-UGCG- -5'
24101 3' -51.8 NC_005262.1 + 23311 0.66 0.882772
Target:  5'- cAUCAagCGCAucAAG-GCGCCGcGCAcgagcACGCg -3'
miRNA:   3'- -UAGUa-GCGU--UUCaUGCGGC-CGU-----UGCG- -5'
24101 3' -51.8 NC_005262.1 + 15597 0.66 0.882772
Target:  5'- -gCG-CGCGAGGaGCGCgugCGGCAggaGCGCa -3'
miRNA:   3'- uaGUaGCGUUUCaUGCG---GCCGU---UGCG- -5'
24101 3' -51.8 NC_005262.1 + 36414 0.66 0.882772
Target:  5'- aGUCcacguUCGCGGAG-GCGCCGaCGACGg -3'
miRNA:   3'- -UAGu----AGCGUUUCaUGCGGCcGUUGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.