miRNA display CGI


Results 41 - 60 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24101 5' -63.9 NC_005262.1 + 38560 0.66 0.325286
Target:  5'- cGGCGUUgCGCGCGGUucGGGCGgaaG-GGCa -3'
miRNA:   3'- uCCGCGA-GCGCGUCG--UCCGCg--CgCUG- -5'
24101 5' -63.9 NC_005262.1 + 13399 0.66 0.317831
Target:  5'- cGGCGCUgaucgcCGCGCGGUucGCGuCGCcACg -3'
miRNA:   3'- uCCGCGA------GCGCGUCGucCGC-GCGcUG- -5'
24101 5' -63.9 NC_005262.1 + 30465 0.66 0.317831
Target:  5'- cGGUGC-CGCGCAGCGacgcaguuGCGUcCGACu -3'
miRNA:   3'- uCCGCGaGCGCGUCGUc-------CGCGcGCUG- -5'
24101 5' -63.9 NC_005262.1 + 51277 0.66 0.325286
Target:  5'- gAGGCGaucgcgUCGCGCGGCAucugaaGCGCGGu -3'
miRNA:   3'- -UCCGCg-----AGCGCGUCGUccg---CGCGCUg -5'
24101 5' -63.9 NC_005262.1 + 39337 0.66 0.303307
Target:  5'- -cGUGC-CGUGCAGCgccaucgaucGGGCGUGaCGGCu -3'
miRNA:   3'- ucCGCGaGCGCGUCG----------UCCGCGC-GCUG- -5'
24101 5' -63.9 NC_005262.1 + 26046 0.66 0.303307
Target:  5'- cGcCGCggCGCGCaAGCAGGgGCGCa-- -3'
miRNA:   3'- uCcGCGa-GCGCG-UCGUCCgCGCGcug -5'
24101 5' -63.9 NC_005262.1 + 8146 0.66 0.303307
Target:  5'- cGGCGUgccgGaCGCGGCcacGaGCGCGCGGCc -3'
miRNA:   3'- uCCGCGag--C-GCGUCGu--C-CGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 17629 0.67 0.285197
Target:  5'- cAGcGCgaGCUCGCcgaGCAGCAGGCagagaucgcccgccaGCGCGcCg -3'
miRNA:   3'- -UC-CG--CGAGCG---CGUCGUCCG---------------CGCGCuG- -5'
24101 5' -63.9 NC_005262.1 + 13466 0.67 0.28047
Target:  5'- aGGGCGCgaagcccgcgcgcgUCGCGCgcuacucgcuGGCgaAGGCGaagGCGGCg -3'
miRNA:   3'- -UCCGCG--------------AGCGCG----------UCG--UCCGCg--CGCUG- -5'
24101 5' -63.9 NC_005262.1 + 50272 0.67 0.275805
Target:  5'- aGGGCGCgccCGCGcCGGCcGaGCcCGUGACg -3'
miRNA:   3'- -UCCGCGa--GCGC-GUCGuC-CGcGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 60504 0.67 0.275805
Target:  5'- cGG-GC-CGCGCGgcGCAGGCcgccaagaGCGUGACg -3'
miRNA:   3'- uCCgCGaGCGCGU--CGUCCG--------CGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 44775 0.67 0.275805
Target:  5'- --uCGCcagCGCGCGGCAGGCcgaGCuCGACg -3'
miRNA:   3'- uccGCGa--GCGCGUCGUCCG---CGcGCUG- -5'
24101 5' -63.9 NC_005262.1 + 26636 0.67 0.275805
Target:  5'- -aGCGCcCGCGUAGCuGGCGCaccGCcuGACu -3'
miRNA:   3'- ucCGCGaGCGCGUCGuCCGCG---CG--CUG- -5'
24101 5' -63.9 NC_005262.1 + 21872 0.67 0.250333
Target:  5'- cGGCGCUgaagccgacCGCGCAGCcGGa-CGaCGACg -3'
miRNA:   3'- uCCGCGA---------GCGCGUCGuCCgcGC-GCUG- -5'
24101 5' -63.9 NC_005262.1 + 23359 0.67 0.250333
Target:  5'- cGGCGUgaagCGCGCGGCggcgaAGGCcCGCaACg -3'
miRNA:   3'- uCCGCGa---GCGCGUCG-----UCCGcGCGcUG- -5'
24101 5' -63.9 NC_005262.1 + 35238 0.67 0.256513
Target:  5'- cGGCGCgaUCG-GCAGCggcuGGGCGCcccCGGCg -3'
miRNA:   3'- uCCGCG--AGCgCGUCG----UCCGCGc--GCUG- -5'
24101 5' -63.9 NC_005262.1 + 51418 0.67 0.269248
Target:  5'- -cGUGCUCG-GCGGC--GCGCGCGAg -3'
miRNA:   3'- ucCGCGAGCgCGUCGucCGCGCGCUg -5'
24101 5' -63.9 NC_005262.1 + 57664 0.67 0.2686
Target:  5'- cGGCGgcacgaucgacuuCUCGCGC-GCcGG-GCGCGGCa -3'
miRNA:   3'- uCCGC-------------GAGCGCGuCGuCCgCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 57749 0.67 0.262818
Target:  5'- aAGGCGCUCgagggcauuGCGC-GCAauGGCGUGCugguuGGCg -3'
miRNA:   3'- -UCCGCGAG---------CGCGuCGU--CCGCGCG-----CUG- -5'
24101 5' -63.9 NC_005262.1 + 17482 0.67 0.262818
Target:  5'- cAGGaCGaagCGCGC-GCc-GCGCGCGACg -3'
miRNA:   3'- -UCC-GCga-GCGCGuCGucCGCGCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.