miRNA display CGI


Results 61 - 80 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24101 5' -63.9 NC_005262.1 + 57749 0.67 0.262818
Target:  5'- aAGGCGCUCgagggcauuGCGC-GCAauGGCGUGCugguuGGCg -3'
miRNA:   3'- -UCCGCGAG---------CGCGuCGU--CCGCGCG-----CUG- -5'
24101 5' -63.9 NC_005262.1 + 57664 0.67 0.2686
Target:  5'- cGGCGgcacgaucgacuuCUCGCGC-GCcGG-GCGCGGCa -3'
miRNA:   3'- uCCGC-------------GAGCGCGuCGuCCgCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 51677 0.67 0.269248
Target:  5'- cGGCgaucuGCUCGCGC-GCAcGGCgGCGCuGAUu -3'
miRNA:   3'- uCCG-----CGAGCGCGuCGU-CCG-CGCG-CUG- -5'
24101 5' -63.9 NC_005262.1 + 44775 0.67 0.275805
Target:  5'- --uCGCcagCGCGCGGCAGGCcgaGCuCGACg -3'
miRNA:   3'- uccGCGa--GCGCGUCGUCCG---CGcGCUG- -5'
24101 5' -63.9 NC_005262.1 + 60504 0.67 0.275805
Target:  5'- cGG-GC-CGCGCGgcGCAGGCcgccaagaGCGUGACg -3'
miRNA:   3'- uCCgCGaGCGCGU--CGUCCG--------CGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 13466 0.67 0.28047
Target:  5'- aGGGCGCgaagcccgcgcgcgUCGCGCgcuacucgcuGGCgaAGGCGaagGCGGCg -3'
miRNA:   3'- -UCCGCG--------------AGCGCG----------UCG--UCCGCg--CGCUG- -5'
24101 5' -63.9 NC_005262.1 + 26636 0.67 0.275805
Target:  5'- -aGCGCcCGCGUAGCuGGCGCaccGCcuGACu -3'
miRNA:   3'- ucCGCGaGCGCGUCGuCCGCG---CG--CUG- -5'
24101 5' -63.9 NC_005262.1 + 14551 0.67 0.275805
Target:  5'- -uGCGCUgGauCGGCAGGCGUcucgccGCGGCg -3'
miRNA:   3'- ucCGCGAgCgcGUCGUCCGCG------CGCUG- -5'
24101 5' -63.9 NC_005262.1 + 4594 0.67 0.282488
Target:  5'- cGGGCGUgagCGCccGCAGgaaCGGGCG-GUGACg -3'
miRNA:   3'- -UCCGCGa--GCG--CGUC---GUCCGCgCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 15337 0.67 0.282488
Target:  5'- cGGCucGCgaucCGCGCGGCAuacGCGCGCGu- -3'
miRNA:   3'- uCCG--CGa---GCGCGUCGUc--CGCGCGCug -5'
24101 5' -63.9 NC_005262.1 + 60126 0.67 0.282488
Target:  5'- aGGGCGCcagCGuCGCGGCgaAGGCauGgGCGAa -3'
miRNA:   3'- -UCCGCGa--GC-GCGUCG--UCCG--CgCGCUg -5'
24101 5' -63.9 NC_005262.1 + 17629 0.67 0.285197
Target:  5'- cAGcGCgaGCUCGCcgaGCAGCAGGCagagaucgcccgccaGCGCGcCg -3'
miRNA:   3'- -UC-CG--CGAGCG---CGUCGUCCG---------------CGCGCuG- -5'
24101 5' -63.9 NC_005262.1 + 51418 0.67 0.269248
Target:  5'- -cGUGCUCG-GCGGC--GCGCGCGAg -3'
miRNA:   3'- ucCGCGAGCgCGUCGucCGCGCGCUg -5'
24101 5' -63.9 NC_005262.1 + 23512 0.67 0.275805
Target:  5'- gAGGaGCUgCGC-CAGCAGGaggaaGCGCGGg -3'
miRNA:   3'- -UCCgCGA-GCGcGUCGUCCg----CGCGCUg -5'
24101 5' -63.9 NC_005262.1 + 50272 0.67 0.275805
Target:  5'- aGGGCGCgccCGCGcCGGCcGaGCcCGUGACg -3'
miRNA:   3'- -UCCGCGa--GCGC-GUCGuC-CGcGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 20489 0.68 0.226833
Target:  5'- gAGuGCGUaaUCGCGCgcaccaucGGCGcGGCGCucGCGACg -3'
miRNA:   3'- -UC-CGCG--AGCGCG--------UCGU-CCGCG--CGCUG- -5'
24101 5' -63.9 NC_005262.1 + 36471 0.68 0.215799
Target:  5'- uGGGCGCgCGCGaGGCuGGCGgacauCGCGAa -3'
miRNA:   3'- -UCCGCGaGCGCgUCGuCCGC-----GCGCUg -5'
24101 5' -63.9 NC_005262.1 + 46981 0.68 0.215799
Target:  5'- cGGCcuGUggGCGaaGGCAuGGCGCGCGACg -3'
miRNA:   3'- uCCG--CGagCGCg-UCGU-CCGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 15827 0.68 0.221257
Target:  5'- -cGCGCUCGCGaucCAGCAGuacGUGaUGCGGCa -3'
miRNA:   3'- ucCGCGAGCGC---GUCGUC---CGC-GCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 60176 0.68 0.221257
Target:  5'- aAGGCGCUCgGC-CAGUGGGCgGCaacCGGCa -3'
miRNA:   3'- -UCCGCGAG-CGcGUCGUCCG-CGc--GCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.