miRNA display CGI


Results 81 - 100 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24101 5' -63.9 NC_005262.1 + 1061 0.68 0.23834
Target:  5'- cGGCGCUgaccgccagCGCGCcgaucaGGguGcGUGCGCGAUu -3'
miRNA:   3'- uCCGCGA---------GCGCG------UCguC-CGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 4892 0.68 0.23834
Target:  5'- cGGGcCGCcggccugaUCGCGCAGCGcGGCagcagccaacGCGCGGa -3'
miRNA:   3'- -UCC-GCG--------AGCGCGUCGU-CCG----------CGCGCUg -5'
24101 5' -63.9 NC_005262.1 + 8835 0.68 0.244275
Target:  5'- uGGCGCgcuucugguuuUCGCGCAGguugaaGCGCaGCGACa -3'
miRNA:   3'- uCCGCG-----------AGCGCGUCguc---CGCG-CGCUG- -5'
24101 5' -63.9 NC_005262.1 + 26542 0.68 0.221257
Target:  5'- cGGCcguuGUUCGUGCGGUucacgcggaAGGCGCGUGuCg -3'
miRNA:   3'- uCCG----CGAGCGCGUCG---------UCCGCGCGCuG- -5'
24101 5' -63.9 NC_005262.1 + 17222 0.68 0.221257
Target:  5'- cGGCGCUgGCGUcguGGUcgucguGGGCGuCGCGGg -3'
miRNA:   3'- uCCGCGAgCGCG---UCG------UCCGC-GCGCUg -5'
24101 5' -63.9 NC_005262.1 + 54788 0.68 0.23834
Target:  5'- aAGGCcaacgacgUCGCGCAGaagauGCGCGCGGCg -3'
miRNA:   3'- -UCCGcg------AGCGCGUCguc--CGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 11473 0.68 0.23834
Target:  5'- -cGCGCUCGCGCgcgAGCacauGGGC-CGCGuCg -3'
miRNA:   3'- ucCGCGAGCGCG---UCG----UCCGcGCGCuG- -5'
24101 5' -63.9 NC_005262.1 + 724 0.68 0.23834
Target:  5'- -aGCGCUUGUGcCAGCAGGUaUGCGuCg -3'
miRNA:   3'- ucCGCGAGCGC-GUCGUCCGcGCGCuG- -5'
24101 5' -63.9 NC_005262.1 + 12932 0.68 0.232527
Target:  5'- -uGCGCggCGCGCugaaGGGCguGCGCGACg -3'
miRNA:   3'- ucCGCGa-GCGCGucg-UCCG--CGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 30944 0.68 0.226833
Target:  5'- cGGCaugacggCGCGCuacuucccGCAGGCGgGCGACu -3'
miRNA:   3'- uCCGcga----GCGCGu-------CGUCCGCgCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 2022 0.68 0.226833
Target:  5'- cGGCGCugcuUCGUGCuGCucgacgGGGCGCGUaGCg -3'
miRNA:   3'- uCCGCG----AGCGCGuCG------UCCGCGCGcUG- -5'
24101 5' -63.9 NC_005262.1 + 20489 0.68 0.226833
Target:  5'- gAGuGCGUaaUCGCGCgcaccaucGGCGcGGCGCucGCGACg -3'
miRNA:   3'- -UC-CGCG--AGCGCG--------UCGU-CCGCG--CGCUG- -5'
24101 5' -63.9 NC_005262.1 + 15827 0.68 0.221257
Target:  5'- -cGCGCUCGCGaucCAGCAGuacGUGaUGCGGCa -3'
miRNA:   3'- ucCGCGAGCGC---GUCGUC---CGC-GCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 60176 0.68 0.221257
Target:  5'- aAGGCGCUCgGC-CAGUGGGCgGCaacCGGCa -3'
miRNA:   3'- -UCCGCGAG-CGcGUCGUCCG-CGc--GCUG- -5'
24101 5' -63.9 NC_005262.1 + 46981 0.68 0.215799
Target:  5'- cGGCcuGUggGCGaaGGCAuGGCGCGCGACg -3'
miRNA:   3'- uCCG--CGagCGCg-UCGU-CCGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 36471 0.68 0.215799
Target:  5'- uGGGCGCgCGCGaGGCuGGCGgacauCGCGAa -3'
miRNA:   3'- -UCCGCGaGCGCgUCGuCCGC-----GCGCUg -5'
24101 5' -63.9 NC_005262.1 + 53245 0.68 0.215799
Target:  5'- cGGCug-CGCGCGGCcGGuCGCGuCGGCa -3'
miRNA:   3'- uCCGcgaGCGCGUCGuCC-GCGC-GCUG- -5'
24101 5' -63.9 NC_005262.1 + 46728 0.68 0.215799
Target:  5'- cGGGCGCgccuaUCgGCGCcGU--GCGCGCGACg -3'
miRNA:   3'- -UCCGCG-----AG-CGCGuCGucCGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 59473 0.68 0.220706
Target:  5'- cGGCccgcgagGCUCGcCGUAGUcgacgaugagGGGCGCGUGAUu -3'
miRNA:   3'- uCCG-------CGAGC-GCGUCG----------UCCGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 7525 0.68 0.23834
Target:  5'- cGGGCagGUUCG-GCGGCGcgucGGCGCGCucGACg -3'
miRNA:   3'- -UCCG--CGAGCgCGUCGU----CCGCGCG--CUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.