miRNA display CGI


Results 41 - 60 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24101 5' -63.9 NC_005262.1 + 22480 0.72 0.122213
Target:  5'- -aGCGCgaaGCGCugaAGCuGGCGCGCGAg -3'
miRNA:   3'- ucCGCGag-CGCG---UCGuCCGCGCGCUg -5'
24101 5' -63.9 NC_005262.1 + 21804 0.72 0.125494
Target:  5'- cGGGCGUUCgucgcguucuGCGCGGCGGuGUcaggcaacagGCGCGGCa -3'
miRNA:   3'- -UCCGCGAG----------CGCGUCGUC-CG----------CGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 36727 0.72 0.122213
Target:  5'- uGGGgGCUgGCGCcGCGGGCGCaguucuGCGcACg -3'
miRNA:   3'- -UCCgCGAgCGCGuCGUCCGCG------CGC-UG- -5'
24101 5' -63.9 NC_005262.1 + 52613 0.72 0.119011
Target:  5'- cGGGCGagcugaaGCGCaccGGCucguGGCGCGCGACc -3'
miRNA:   3'- -UCCGCgag----CGCG---UCGu---CCGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 40235 0.72 0.121889
Target:  5'- -uGCGCccgCGCGCGGCGGGCgguuggucagucuGCGCGGu -3'
miRNA:   3'- ucCGCGa--GCGCGUCGUCCG-------------CGCGCUg -5'
24101 5' -63.9 NC_005262.1 + 17267 0.71 0.138357
Target:  5'- cGGCGC-CGCGCugggcugcugcgcgGGCAGGgGCGUcGCg -3'
miRNA:   3'- uCCGCGaGCGCG--------------UCGUCCgCGCGcUG- -5'
24101 5' -63.9 NC_005262.1 + 58930 0.71 0.135834
Target:  5'- cGGCGCUCG-GCaAGCu-GCGCcGCGACa -3'
miRNA:   3'- uCCGCGAGCgCG-UCGucCGCG-CGCUG- -5'
24101 5' -63.9 NC_005262.1 + 17360 0.71 0.132303
Target:  5'- cGGCGCgggCgGCGCGGCGGGCcccuGCG-GACc -3'
miRNA:   3'- uCCGCGa--G-CGCGUCGUCCG----CGCgCUG- -5'
24101 5' -63.9 NC_005262.1 + 12223 0.71 0.132303
Target:  5'- uGGGCGg-CGCGCucaAGCuccGCGCGCGACc -3'
miRNA:   3'- -UCCGCgaGCGCG---UCGuc-CGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 17557 0.71 0.139451
Target:  5'- gAGGCGgcaGcCGCGGC-GGCGCGCGAa -3'
miRNA:   3'- -UCCGCgagC-GCGUCGuCCGCGCGCUg -5'
24101 5' -63.9 NC_005262.1 + 25976 0.71 0.128857
Target:  5'- uGcCGCUCGCGCAGUAcacGGCGggcacguuCGCGACg -3'
miRNA:   3'- uCcGCGAGCGCGUCGU---CCGC--------GCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 17752 0.71 0.146568
Target:  5'- cGGCGacgCGCGCaugacuucguaguAGCGcGGCaGCGCGACg -3'
miRNA:   3'- uCCGCga-GCGCG-------------UCGU-CCG-CGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 60060 0.71 0.135834
Target:  5'- cGGCGUUCauccuGCGCAacGCc-GCGCGCGACg -3'
miRNA:   3'- uCCGCGAG-----CGCGU--CGucCGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 22597 0.71 0.139451
Target:  5'- cGGUGCUCGaaGCGGUcgccGGGCGCGC-ACg -3'
miRNA:   3'- uCCGCGAGCg-CGUCG----UCCGCGCGcUG- -5'
24101 5' -63.9 NC_005262.1 + 38318 0.71 0.143157
Target:  5'- cGGCcUUCGUGCAGUuGGCGaGCGGCa -3'
miRNA:   3'- uCCGcGAGCGCGUCGuCCGCgCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 58121 0.71 0.150839
Target:  5'- uGGGUGCcgaUgGUGCAGUAccucccgauGGUGCGCGGCa -3'
miRNA:   3'- -UCCGCG---AgCGCGUCGU---------CCGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 52822 0.71 0.150839
Target:  5'- cAGGCGCUCGgcgaGCGGCugaAGGCuGCGCu-- -3'
miRNA:   3'- -UCCGCGAGCg---CGUCG---UCCG-CGCGcug -5'
24101 5' -63.9 NC_005262.1 + 23324 0.71 0.132303
Target:  5'- aAGGCGC-CGCGCacgAGCAcGCGCuCGACc -3'
miRNA:   3'- -UCCGCGaGCGCG---UCGUcCGCGcGCUG- -5'
24101 5' -63.9 NC_005262.1 + 28167 0.71 0.132303
Target:  5'- cGGCGCaacugCGCGCGGC-GGC-CGuCGACa -3'
miRNA:   3'- uCCGCGa----GCGCGUCGuCCGcGC-GCUG- -5'
24101 5' -63.9 NC_005262.1 + 14046 0.71 0.139451
Target:  5'- cGGGCGCggGCGCcGCcGGCGUcgguGCGGCu -3'
miRNA:   3'- -UCCGCGagCGCGuCGuCCGCG----CGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.