miRNA display CGI


Results 61 - 80 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24101 5' -63.9 NC_005262.1 + 29417 0.7 0.153615
Target:  5'- cGaCGCUCGaggaGCAGCAGGCGaaggcccgcaaggcUGCGGCa -3'
miRNA:   3'- uCcGCGAGCg---CGUCGUCCGC--------------GCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 48647 0.7 0.154819
Target:  5'- aAGGUGCUgaCGCAGCAGGaGCuCGACa -3'
miRNA:   3'- -UCCGCGAgcGCGUCGUCCgCGcGCUG- -5'
24101 5' -63.9 NC_005262.1 + 15886 0.7 0.158893
Target:  5'- uGGCGCUgaucCGCcGCGuGCGCGCGACg -3'
miRNA:   3'- uCCGCGAgc--GCGuCGUcCGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 12478 0.7 0.158893
Target:  5'- gGGGCGC-CGCGCGGCAuaCGCaGUGAg -3'
miRNA:   3'- -UCCGCGaGCGCGUCGUccGCG-CGCUg -5'
24101 5' -63.9 NC_005262.1 + 11874 0.7 0.163065
Target:  5'- cGGCGacguguaUCGCGCgaaAGguGGC-CGCGGCa -3'
miRNA:   3'- uCCGCg------AGCGCG---UCguCCGcGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 51955 0.7 0.163065
Target:  5'- gAGGcCGCUCGCGCGcGCcuGCGCuCGAa -3'
miRNA:   3'- -UCC-GCGAGCGCGU-CGucCGCGcGCUg -5'
24101 5' -63.9 NC_005262.1 + 12103 0.7 0.167334
Target:  5'- cGGGCGCaaUCaGCGCcGCcGuGCGCGCGAg -3'
miRNA:   3'- -UCCGCG--AG-CGCGuCGuC-CGCGCGCUg -5'
24101 5' -63.9 NC_005262.1 + 46532 0.7 0.167334
Target:  5'- uAGGUG-UCGCGCAGCucgaacAGGCGCGUc-- -3'
miRNA:   3'- -UCCGCgAGCGCGUCG------UCCGCGCGcug -5'
24101 5' -63.9 NC_005262.1 + 58633 0.7 0.167334
Target:  5'- cAGGCucgGCagUCGaGCGGcCGGGCGCGCGAg -3'
miRNA:   3'- -UCCG---CG--AGCgCGUC-GUCCGCGCGCUg -5'
24101 5' -63.9 NC_005262.1 + 55004 0.7 0.167334
Target:  5'- aAGGCGacauguacCUCGCGCAcGCGgucGGCGCG-GGCa -3'
miRNA:   3'- -UCCGC--------GAGCGCGU-CGU---CCGCGCgCUG- -5'
24101 5' -63.9 NC_005262.1 + 40398 0.7 0.167334
Target:  5'- -cGCGUUCGCGCGGauuCAGccGCGCGuCGGCg -3'
miRNA:   3'- ucCGCGAGCGCGUC---GUC--CGCGC-GCUG- -5'
24101 5' -63.9 NC_005262.1 + 52585 0.7 0.171704
Target:  5'- cGGCGCggcucUCGaucuuGCAGguGGCGCGC-ACg -3'
miRNA:   3'- uCCGCG-----AGCg----CGUCguCCGCGCGcUG- -5'
24101 5' -63.9 NC_005262.1 + 18654 0.7 0.171704
Target:  5'- cGaGCGCcuugUCGCGCAcGUucuGGCGCGCGGu -3'
miRNA:   3'- uC-CGCG----AGCGCGU-CGu--CCGCGCGCUg -5'
24101 5' -63.9 NC_005262.1 + 36805 0.7 0.176175
Target:  5'- -aGUGCggCGCGCucGGCGGGCGUgaGCGAUg -3'
miRNA:   3'- ucCGCGa-GCGCG--UCGUCCGCG--CGCUG- -5'
24101 5' -63.9 NC_005262.1 + 52394 0.7 0.176628
Target:  5'- cGGCGCg-GCGCGGCuucggcguggagccGCGCGCGAa -3'
miRNA:   3'- uCCGCGagCGCGUCGuc------------CGCGCGCUg -5'
24101 5' -63.9 NC_005262.1 + 3315 0.7 0.177993
Target:  5'- cGGCGUcucgcccugaUCGCGCAGCgucauguagagcgacAGGCGCaGCG-Cg -3'
miRNA:   3'- uCCGCG----------AGCGCGUCG---------------UCCGCG-CGCuG- -5'
24101 5' -63.9 NC_005262.1 + 38854 0.69 0.18075
Target:  5'- uGGGCGCgcCGCGCGGCcauGUGCGCa-- -3'
miRNA:   3'- -UCCGCGa-GCGCGUCGuc-CGCGCGcug -5'
24101 5' -63.9 NC_005262.1 + 49165 0.69 0.18075
Target:  5'- cAGGcCGCaUCGgcCGCAGCGGcGCGCaCGGCg -3'
miRNA:   3'- -UCC-GCG-AGC--GCGUCGUC-CGCGcGCUG- -5'
24101 5' -63.9 NC_005262.1 + 19957 0.69 0.18075
Target:  5'- cGGCcaccGCcgCGCGCGGCcGGCcCGCGGCc -3'
miRNA:   3'- uCCG----CGa-GCGCGUCGuCCGcGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 45396 0.69 0.185429
Target:  5'- uGGGCGg-CGCaGCAGCAGGCaGcCGCG-Ca -3'
miRNA:   3'- -UCCGCgaGCG-CGUCGUCCG-C-GCGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.