miRNA display CGI


Results 81 - 100 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24101 5' -63.9 NC_005262.1 + 62712 0.69 0.185429
Target:  5'- uGGGUaaUCGCGCAcGCAcccugaucGGCGCGCuGGCg -3'
miRNA:   3'- -UCCGcgAGCGCGU-CGU--------CCGCGCG-CUG- -5'
24101 5' -63.9 NC_005262.1 + 45396 0.69 0.185429
Target:  5'- uGGGCGg-CGCaGCAGCAGGCaGcCGCG-Ca -3'
miRNA:   3'- -UCCGCgaGCG-CGUCGUCCG-C-GCGCuG- -5'
24101 5' -63.9 NC_005262.1 + 43874 0.69 0.188768
Target:  5'- cGGCGCgaucgCGCGCauGGCcgacaugaagucgaAGGCgucaGCGCGGCg -3'
miRNA:   3'- uCCGCGa----GCGCG--UCG--------------UCCG----CGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 59211 0.69 0.190215
Target:  5'- cGGGCGCUCaCGCccgAGCAGcGCcgccgcugGCGCGAg -3'
miRNA:   3'- -UCCGCGAGcGCG---UCGUC-CG--------CGCGCUg -5'
24101 5' -63.9 NC_005262.1 + 13686 0.69 0.190215
Target:  5'- --aCGCgCGCGguGCuGGCGCGUGAg -3'
miRNA:   3'- uccGCGaGCGCguCGuCCGCGCGCUg -5'
24101 5' -63.9 NC_005262.1 + 4610 0.69 0.190215
Target:  5'- aAGGCGCUCcauCAGCGGGCcCGUGAg -3'
miRNA:   3'- -UCCGCGAGcgcGUCGUCCGcGCGCUg -5'
24101 5' -63.9 NC_005262.1 + 24871 0.69 0.195109
Target:  5'- cGGCGa-UGUGCAuccGCcGGCGCGUGACa -3'
miRNA:   3'- uCCGCgaGCGCGU---CGuCCGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 43347 0.69 0.195109
Target:  5'- cGGCGaUCGaCGCGGCgaAGGCGCacaaCGACa -3'
miRNA:   3'- uCCGCgAGC-GCGUCG--UCCGCGc---GCUG- -5'
24101 5' -63.9 NC_005262.1 + 12567 0.69 0.197098
Target:  5'- cGGCGCUCGUcgagcugcugcugccGcCGGCgAGGCGuCGCGGa -3'
miRNA:   3'- uCCGCGAGCG---------------C-GUCG-UCCGC-GCGCUg -5'
24101 5' -63.9 NC_005262.1 + 12175 0.69 0.199608
Target:  5'- -cGCGCUgucUGCGCGGCAGGagcaaauCGCGCaGAUg -3'
miRNA:   3'- ucCGCGA---GCGCGUCGUCC-------GCGCG-CUG- -5'
24101 5' -63.9 NC_005262.1 + 5595 0.69 0.200113
Target:  5'- cGGCGC-CGCuCuccGCAGGCGaCGCGGa -3'
miRNA:   3'- uCCGCGaGCGcGu--CGUCCGC-GCGCUg -5'
24101 5' -63.9 NC_005262.1 + 4563 0.69 0.200113
Target:  5'- cGGCGCaucUCGCGcCAGC-GGCgGCGCuGCu -3'
miRNA:   3'- uCCGCG---AGCGC-GUCGuCCG-CGCGcUG- -5'
24101 5' -63.9 NC_005262.1 + 49630 0.69 0.20062
Target:  5'- cAGGCGCUCGguggccucgcgaucgGCGGCcugcaAGGCG-GCGGCa -3'
miRNA:   3'- -UCCGCGAGCg--------------CGUCG-----UCCGCgCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 46524 0.69 0.205229
Target:  5'- --cUGCcCGCGCAGCAGcccaGCGCGGCg -3'
miRNA:   3'- uccGCGaGCGCGUCGUCcg--CGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 40508 0.69 0.205229
Target:  5'- uGGCGaaCGaCGgGGCGGGCGUgaagaaGCGACg -3'
miRNA:   3'- uCCGCgaGC-GCgUCGUCCGCG------CGCUG- -5'
24101 5' -63.9 NC_005262.1 + 25736 0.69 0.208876
Target:  5'- gAGGCGaUCGCGCAGgccggcaagccgcuCAcGGCcCGCGACu -3'
miRNA:   3'- -UCCGCgAGCGCGUC--------------GU-CCGcGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 54127 0.69 0.210457
Target:  5'- cGGUGUUUGCGCAGgAgcGGCaGCGCcaGACa -3'
miRNA:   3'- uCCGCGAGCGCGUCgU--CCG-CGCG--CUG- -5'
24101 5' -63.9 NC_005262.1 + 53916 0.69 0.210457
Target:  5'- -uGCGCgaCGCGCugaAGCAGGCGCagcuCGACc -3'
miRNA:   3'- ucCGCGa-GCGCG---UCGUCCGCGc---GCUG- -5'
24101 5' -63.9 NC_005262.1 + 46728 0.68 0.215799
Target:  5'- cGGGCGCgccuaUCgGCGCcGU--GCGCGCGACg -3'
miRNA:   3'- -UCCGCG-----AG-CGCGuCGucCGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 36471 0.68 0.215799
Target:  5'- uGGGCGCgCGCGaGGCuGGCGgacauCGCGAa -3'
miRNA:   3'- -UCCGCGaGCGCgUCGuCCGC-----GCGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.