miRNA display CGI


Results 61 - 80 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24101 5' -63.9 NC_005262.1 + 51677 0.67 0.269248
Target:  5'- cGGCgaucuGCUCGCGC-GCAcGGCgGCGCuGAUu -3'
miRNA:   3'- uCCG-----CGAGCGCGuCGU-CCG-CGCG-CUG- -5'
24101 5' -63.9 NC_005262.1 + 57664 0.67 0.2686
Target:  5'- cGGCGgcacgaucgacuuCUCGCGC-GCcGG-GCGCGGCa -3'
miRNA:   3'- uCCGC-------------GAGCGCGuCGuCCgCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 41608 0.67 0.262818
Target:  5'- uGGCGCUCaGgGCAGCGGaaCG-GUGACg -3'
miRNA:   3'- uCCGCGAG-CgCGUCGUCc-GCgCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 17482 0.67 0.262818
Target:  5'- cAGGaCGaagCGCGC-GCc-GCGCGCGACg -3'
miRNA:   3'- -UCC-GCga-GCGCGuCGucCGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 57749 0.67 0.262818
Target:  5'- aAGGCGCUCgagggcauuGCGC-GCAauGGCGUGCugguuGGCg -3'
miRNA:   3'- -UCCGCGAG---------CGCGuCGU--CCGCGCG-----CUG- -5'
24101 5' -63.9 NC_005262.1 + 9368 0.67 0.262818
Target:  5'- cGGCGCgCGCgGCGGCcuGCGCcuccGCGAg -3'
miRNA:   3'- uCCGCGaGCG-CGUCGucCGCG----CGCUg -5'
24101 5' -63.9 NC_005262.1 + 50770 0.67 0.262818
Target:  5'- -cGCGCacCGCGUAGCccuuGGCGCGCu-- -3'
miRNA:   3'- ucCGCGa-GCGCGUCGu---CCGCGCGcug -5'
24101 5' -63.9 NC_005262.1 + 57956 0.67 0.256513
Target:  5'- aGGGCGCgagCGCGCuugaaauuGGCGCGCc-- -3'
miRNA:   3'- -UCCGCGa--GCGCGucgu----CCGCGCGcug -5'
24101 5' -63.9 NC_005262.1 + 48769 0.67 0.256513
Target:  5'- cGGCGCgaacauggcaGCGCAGgAcGUGCGCGAg -3'
miRNA:   3'- uCCGCGag--------CGCGUCgUcCGCGCGCUg -5'
24101 5' -63.9 NC_005262.1 + 35238 0.67 0.256513
Target:  5'- cGGCGCgaUCG-GCAGCggcuGGGCGCcccCGGCg -3'
miRNA:   3'- uCCGCG--AGCgCGUCG----UCCGCGc--GCUG- -5'
24101 5' -63.9 NC_005262.1 + 46233 0.67 0.256513
Target:  5'- cGGC-UUCGCGCGccgccGCGGcugccgccucGCGCGCGACc -3'
miRNA:   3'- uCCGcGAGCGCGU-----CGUC----------CGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 57273 0.67 0.250333
Target:  5'- ---aGCUCGCGCAGCucacGGCcCGCGuGCa -3'
miRNA:   3'- uccgCGAGCGCGUCGu---CCGcGCGC-UG- -5'
24101 5' -63.9 NC_005262.1 + 21872 0.67 0.250333
Target:  5'- cGGCGCUgaagccgacCGCGCAGCcGGa-CGaCGACg -3'
miRNA:   3'- uCCGCGA---------GCGCGUCGuCCgcGC-GCUG- -5'
24101 5' -63.9 NC_005262.1 + 23359 0.67 0.250333
Target:  5'- cGGCGUgaagCGCGCGGCggcgaAGGCcCGCaACg -3'
miRNA:   3'- uCCGCGa---GCGCGUCG-----UCCGcGCGcUG- -5'
24101 5' -63.9 NC_005262.1 + 13231 0.67 0.250333
Target:  5'- cGG-GCUCGgGCuGCgguugaacGGGUGCGCGAg -3'
miRNA:   3'- uCCgCGAGCgCGuCG--------UCCGCGCGCUg -5'
24101 5' -63.9 NC_005262.1 + 8835 0.68 0.244275
Target:  5'- uGGCGCgcuucugguuuUCGCGCAGguugaaGCGCaGCGACa -3'
miRNA:   3'- uCCGCG-----------AGCGCGUCguc---CGCG-CGCUG- -5'
24101 5' -63.9 NC_005262.1 + 724 0.68 0.23834
Target:  5'- -aGCGCUUGUGcCAGCAGGUaUGCGuCg -3'
miRNA:   3'- ucCGCGAGCGC-GUCGUCCGcGCGCuG- -5'
24101 5' -63.9 NC_005262.1 + 7525 0.68 0.23834
Target:  5'- cGGGCagGUUCG-GCGGCGcgucGGCGCGCucGACg -3'
miRNA:   3'- -UCCG--CGAGCgCGUCGU----CCGCGCG--CUG- -5'
24101 5' -63.9 NC_005262.1 + 54788 0.68 0.23834
Target:  5'- aAGGCcaacgacgUCGCGCAGaagauGCGCGCGGCg -3'
miRNA:   3'- -UCCGcg------AGCGCGUCguc--CGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 11473 0.68 0.23834
Target:  5'- -cGCGCUCGCGCgcgAGCacauGGGC-CGCGuCg -3'
miRNA:   3'- ucCGCGAGCGCG---UCG----UCCGcGCGCuG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.