miRNA display CGI


Results 41 - 60 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24101 5' -63.9 NC_005262.1 + 13462 0.86 0.00985
Target:  5'- cGGGCGCUucguccUGCGCGGCGGGCGCuGCGGCc -3'
miRNA:   3'- -UCCGCGA------GCGCGUCGUCCGCG-CGCUG- -5'
24101 5' -63.9 NC_005262.1 + 13466 0.67 0.28047
Target:  5'- aGGGCGCgaagcccgcgcgcgUCGCGCgcuacucgcuGGCgaAGGCGaagGCGGCg -3'
miRNA:   3'- -UCCGCG--------------AGCGCG----------UCG--UCCGCg--CGCUG- -5'
24101 5' -63.9 NC_005262.1 + 13646 0.73 0.098702
Target:  5'- cAGGCGgUCGCGCAGCucAGGCuCGCu-- -3'
miRNA:   3'- -UCCGCgAGCGCGUCG--UCCGcGCGcug -5'
24101 5' -63.9 NC_005262.1 + 13686 0.69 0.190215
Target:  5'- --aCGCgCGCGguGCuGGCGCGUGAg -3'
miRNA:   3'- uccGCGaGCGCguCGuCCGCGCGCUg -5'
24101 5' -63.9 NC_005262.1 + 13697 0.73 0.106971
Target:  5'- cGGCuucuGUUCGCGCGGCGcggguucggucGGCGCaGCGGCc -3'
miRNA:   3'- uCCG----CGAGCGCGUCGU-----------CCGCG-CGCUG- -5'
24101 5' -63.9 NC_005262.1 + 13795 0.66 0.291368
Target:  5'- uGGGCGC-CgGCGCggcuucaucggcgggAGCGGGCGCcgcugucucgucgGCGAUc -3'
miRNA:   3'- -UCCGCGaG-CGCG---------------UCGUCCGCG-------------CGCUG- -5'
24101 5' -63.9 NC_005262.1 + 14046 0.71 0.139451
Target:  5'- cGGGCGCggGCGCcGCcGGCGUcgguGCGGCu -3'
miRNA:   3'- -UCCGCGagCGCGuCGuCCGCG----CGCUG- -5'
24101 5' -63.9 NC_005262.1 + 14551 0.67 0.275805
Target:  5'- -uGCGCUgGauCGGCAGGCGUcucgccGCGGCg -3'
miRNA:   3'- ucCGCGAgCgcGUCGUCCGCG------CGCUG- -5'
24101 5' -63.9 NC_005262.1 + 15337 0.67 0.282488
Target:  5'- cGGCucGCgaucCGCGCGGCAuacGCGCGCGu- -3'
miRNA:   3'- uCCG--CGa---GCGCGUCGUc--CGCGCGCug -5'
24101 5' -63.9 NC_005262.1 + 15588 0.79 0.035778
Target:  5'- gAGGCGCgcgCGCGCgAGgAGcGCGUGCGGCa -3'
miRNA:   3'- -UCCGCGa--GCGCG-UCgUC-CGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 15661 0.66 0.332871
Target:  5'- aGGGCGaacuucggaUCGaCGCcgAGCucuuGCGCGCGGCg -3'
miRNA:   3'- -UCCGCg--------AGC-GCG--UCGuc--CGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 15726 0.83 0.016814
Target:  5'- cGGGCgGCUCGuCGCGGCAGGUGCGacCGACg -3'
miRNA:   3'- -UCCG-CGAGC-GCGUCGUCCGCGC--GCUG- -5'
24101 5' -63.9 NC_005262.1 + 15827 0.68 0.221257
Target:  5'- -cGCGCUCGCGaucCAGCAGuacGUGaUGCGGCa -3'
miRNA:   3'- ucCGCGAGCGC---GUCGUC---CGC-GCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 15886 0.7 0.158893
Target:  5'- uGGCGCUgaucCGCcGCGuGCGCGCGACg -3'
miRNA:   3'- uCCGCGAgc--GCGuCGUcCGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 17081 0.76 0.0542
Target:  5'- uAGGCGCgcccgUCGaCGCGGCGGGC-CGCGAg -3'
miRNA:   3'- -UCCGCG-----AGC-GCGUCGUCCGcGCGCUg -5'
24101 5' -63.9 NC_005262.1 + 17222 0.68 0.221257
Target:  5'- cGGCGCUgGCGUcguGGUcgucguGGGCGuCGCGGg -3'
miRNA:   3'- uCCGCGAgCGCG---UCG------UCCGC-GCGCUg -5'
24101 5' -63.9 NC_005262.1 + 17267 0.71 0.138357
Target:  5'- cGGCGC-CGCGCugggcugcugcgcgGGCAGGgGCGUcGCg -3'
miRNA:   3'- uCCGCGaGCGCG--------------UCGUCCgCGCGcUG- -5'
24101 5' -63.9 NC_005262.1 + 17360 0.71 0.132303
Target:  5'- cGGCGCgggCgGCGCGGCGGGCcccuGCG-GACc -3'
miRNA:   3'- uCCGCGa--G-CGCGUCGUCCG----CGCgCUG- -5'
24101 5' -63.9 NC_005262.1 + 17482 0.67 0.262818
Target:  5'- cAGGaCGaagCGCGC-GCc-GCGCGCGACg -3'
miRNA:   3'- -UCC-GCga-GCGCGuCGucCGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 17557 0.71 0.139451
Target:  5'- gAGGCGgcaGcCGCGGC-GGCGCGCGAa -3'
miRNA:   3'- -UCCGCgagC-GCGUCGuCCGCGCGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.