miRNA display CGI


Results 61 - 80 of 199 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24101 5' -63.9 NC_005262.1 + 17629 0.67 0.285197
Target:  5'- cAGcGCgaGCUCGCcgaGCAGCAGGCagagaucgcccgccaGCGCGcCg -3'
miRNA:   3'- -UC-CG--CGAGCG---CGUCGUCCG---------------CGCGCuG- -5'
24101 5' -63.9 NC_005262.1 + 17752 0.71 0.146568
Target:  5'- cGGCGacgCGCGCaugacuucguaguAGCGcGGCaGCGCGACg -3'
miRNA:   3'- uCCGCga-GCGCG-------------UCGU-CCG-CGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 18654 0.7 0.171704
Target:  5'- cGaGCGCcuugUCGCGCAcGUucuGGCGCGCGGu -3'
miRNA:   3'- uC-CGCG----AGCGCGU-CGu--CCGCGCGCUg -5'
24101 5' -63.9 NC_005262.1 + 18726 0.74 0.088612
Target:  5'- aAGGCGCUCcucagcuucgGCGCGGCucGGCGCGUcguaGAUg -3'
miRNA:   3'- -UCCGCGAG----------CGCGUCGu-CCGCGCG----CUG- -5'
24101 5' -63.9 NC_005262.1 + 19380 0.66 0.317831
Target:  5'- gAGGuCGCcaUCGUGU-GC-GGCGCGCGGg -3'
miRNA:   3'- -UCC-GCG--AGCGCGuCGuCCGCGCGCUg -5'
24101 5' -63.9 NC_005262.1 + 19957 0.69 0.18075
Target:  5'- cGGCcaccGCcgCGCGCGGCcGGCcCGCGGCc -3'
miRNA:   3'- uCCG----CGa-GCGCGUCGuCCGcGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 20489 0.68 0.226833
Target:  5'- gAGuGCGUaaUCGCGCgcaccaucGGCGcGGCGCucGCGACg -3'
miRNA:   3'- -UC-CGCG--AGCGCG--------UCGU-CCGCG--CGCUG- -5'
24101 5' -63.9 NC_005262.1 + 21343 0.66 0.317831
Target:  5'- gAGGCGaUCGagGCGGCcaAGGCcGCGCGcaGCg -3'
miRNA:   3'- -UCCGCgAGCg-CGUCG--UCCG-CGCGC--UG- -5'
24101 5' -63.9 NC_005262.1 + 21535 0.66 0.325286
Target:  5'- uGcCGCUCGuCGCcGCAGuGaGCGCGGCg -3'
miRNA:   3'- uCcGCGAGC-GCGuCGUC-CgCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 21690 0.66 0.289299
Target:  5'- cGGCGC-CGCGCugcuguacGCGGGCaCGCaGAUc -3'
miRNA:   3'- uCCGCGaGCGCGu-------CGUCCGcGCG-CUG- -5'
24101 5' -63.9 NC_005262.1 + 21739 0.73 0.106971
Target:  5'- aAGGCGCucacggaagaUCGCGCAGC-GGCaCGCGuCa -3'
miRNA:   3'- -UCCGCG----------AGCGCGUCGuCCGcGCGCuG- -5'
24101 5' -63.9 NC_005262.1 + 21804 0.72 0.125494
Target:  5'- cGGGCGUUCgucgcguucuGCGCGGCGGuGUcaggcaacagGCGCGGCa -3'
miRNA:   3'- -UCCGCGAG----------CGCGUCGUC-CG----------CGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 21872 0.67 0.250333
Target:  5'- cGGCGCUgaagccgacCGCGCAGCcGGa-CGaCGACg -3'
miRNA:   3'- uCCGCGA---------GCGCGUCGuCCgcGC-GCUG- -5'
24101 5' -63.9 NC_005262.1 + 22480 0.72 0.122213
Target:  5'- -aGCGCgaaGCGCugaAGCuGGCGCGCGAg -3'
miRNA:   3'- ucCGCGag-CGCG---UCGuCCGCGCGCUg -5'
24101 5' -63.9 NC_005262.1 + 22597 0.71 0.139451
Target:  5'- cGGUGCUCGaaGCGGUcgccGGGCGCGC-ACg -3'
miRNA:   3'- uCCGCGAGCg-CGUCG----UCCGCGCGcUG- -5'
24101 5' -63.9 NC_005262.1 + 23324 0.71 0.132303
Target:  5'- aAGGCGC-CGCGCacgAGCAcGCGCuCGACc -3'
miRNA:   3'- -UCCGCGaGCGCG---UCGUcCGCGcGCUG- -5'
24101 5' -63.9 NC_005262.1 + 23359 0.67 0.250333
Target:  5'- cGGCGUgaagCGCGCGGCggcgaAGGCcCGCaACg -3'
miRNA:   3'- uCCGCGa---GCGCGUCG-----UCCGcGCGcUG- -5'
24101 5' -63.9 NC_005262.1 + 23386 0.66 0.325286
Target:  5'- cAGGuCGCcgaCGCGCGGCuGaaucCGCGCGAa -3'
miRNA:   3'- -UCC-GCGa--GCGCGUCGuCc---GCGCGCUg -5'
24101 5' -63.9 NC_005262.1 + 23512 0.67 0.275805
Target:  5'- gAGGaGCUgCGC-CAGCAGGaggaaGCGCGGg -3'
miRNA:   3'- -UCCgCGA-GCGcGUCGUCCg----CGCGCUg -5'
24101 5' -63.9 NC_005262.1 + 24731 0.74 0.086247
Target:  5'- -cGCGCUgGCGCGcGCGaucGGCGUGCGGCc -3'
miRNA:   3'- ucCGCGAgCGCGU-CGU---CCGCGCGCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.