miRNA display CGI


Results 81 - 100 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24101 5' -63.9 NC_005262.1 + 24871 0.69 0.195109
Target:  5'- cGGCGa-UGUGCAuccGCcGGCGCGUGACa -3'
miRNA:   3'- uCCGCgaGCGCGU---CGuCCGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 25736 0.69 0.208876
Target:  5'- gAGGCGaUCGCGCAGgccggcaagccgcuCAcGGCcCGCGACu -3'
miRNA:   3'- -UCCGCgAGCGCGUC--------------GU-CCGcGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 25976 0.71 0.128857
Target:  5'- uGcCGCUCGCGCAGUAcacGGCGggcacguuCGCGACg -3'
miRNA:   3'- uCcGCGAGCGCGUCGU---CCGC--------GCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 26046 0.66 0.303307
Target:  5'- cGcCGCggCGCGCaAGCAGGgGCGCa-- -3'
miRNA:   3'- uCcGCGa-GCGCG-UCGUCCgCGCGcug -5'
24101 5' -63.9 NC_005262.1 + 26152 0.74 0.086247
Target:  5'- uGGGUGCUccaaCGCGUcgAGCAcgaguGGCGCGCGAUc -3'
miRNA:   3'- -UCCGCGA----GCGCG--UCGU-----CCGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 26542 0.68 0.221257
Target:  5'- cGGCcguuGUUCGUGCGGUucacgcggaAGGCGCGUGuCg -3'
miRNA:   3'- uCCG----CGAGCGCGUCG---------UCCGCGCGCuG- -5'
24101 5' -63.9 NC_005262.1 + 26636 0.67 0.275805
Target:  5'- -aGCGCcCGCGUAGCuGGCGCaccGCcuGACu -3'
miRNA:   3'- ucCGCGaGCGCGUCGuCCGCG---CG--CUG- -5'
24101 5' -63.9 NC_005262.1 + 27513 0.66 0.317831
Target:  5'- gAGGUGUUCGCGUcGCc-GCGCGCc-- -3'
miRNA:   3'- -UCCGCGAGCGCGuCGucCGCGCGcug -5'
24101 5' -63.9 NC_005262.1 + 27929 0.66 0.308331
Target:  5'- uAGGUGCgCGCGUcGCgcgcacaaacaucuGGGCGguCGCGGCg -3'
miRNA:   3'- -UCCGCGaGCGCGuCG--------------UCCGC--GCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 28167 0.71 0.132303
Target:  5'- cGGCGCaacugCGCGCGGC-GGC-CGuCGACa -3'
miRNA:   3'- uCCGCGa----GCGCGUCGuCCGcGC-GCUG- -5'
24101 5' -63.9 NC_005262.1 + 28285 0.66 0.317831
Target:  5'- cGGCGCUgucgccuaUGCGC-GCAaGCGCGUGcGCa -3'
miRNA:   3'- uCCGCGA--------GCGCGuCGUcCGCGCGC-UG- -5'
24101 5' -63.9 NC_005262.1 + 29417 0.7 0.153615
Target:  5'- cGaCGCUCGaggaGCAGCAGGCGaaggcccgcaaggcUGCGGCa -3'
miRNA:   3'- uCcGCGAGCg---CGUCGUCCGC--------------GCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 30465 0.66 0.317831
Target:  5'- cGGUGC-CGCGCAGCGacgcaguuGCGUcCGACu -3'
miRNA:   3'- uCCGCGaGCGCGUCGUc-------CGCGcGCUG- -5'
24101 5' -63.9 NC_005262.1 + 30501 0.66 0.332871
Target:  5'- cGGC-UUCgGCGCccGGCGuGCGCGCGAUg -3'
miRNA:   3'- uCCGcGAG-CGCG--UCGUcCGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 30876 0.74 0.079508
Target:  5'- aAGGCGCUgGCG-AGCGucGcGCGUGCGACg -3'
miRNA:   3'- -UCCGCGAgCGCgUCGU--C-CGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 30944 0.68 0.226833
Target:  5'- cGGCaugacggCGCGCuacuucccGCAGGCGgGCGACu -3'
miRNA:   3'- uCCGcga----GCGCGu-------CGUCCGCgCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 32291 0.69 0.185429
Target:  5'- cGGCGCgggCGCGaacgucgaGGCAGcGCGUGCG-Cu -3'
miRNA:   3'- uCCGCGa--GCGCg-------UCGUC-CGCGCGCuG- -5'
24101 5' -63.9 NC_005262.1 + 32567 0.73 0.096082
Target:  5'- uGGGCGCgUCGauCGaCAGGCGCGCGAUc -3'
miRNA:   3'- -UCCGCG-AGCgcGUcGUCCGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 33280 0.66 0.289299
Target:  5'- gAGGCGUaccgcaUCGCGCGcacGcCGGGCGC-CGAa -3'
miRNA:   3'- -UCCGCG------AGCGCGU---C-GUCCGCGcGCUg -5'
24101 5' -63.9 NC_005262.1 + 33927 0.73 0.104145
Target:  5'- cGGUGC-CGagcuCGCGGCGGGCaCGCGGCa -3'
miRNA:   3'- uCCGCGaGC----GCGUCGUCCGcGCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.