miRNA display CGI


Results 21 - 40 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24101 5' -63.9 NC_005262.1 + 57664 0.67 0.2686
Target:  5'- cGGCGgcacgaucgacuuCUCGCGC-GCcGG-GCGCGGCa -3'
miRNA:   3'- uCCGC-------------GAGCGCGuCGuCCgCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 57465 0.66 0.317831
Target:  5'- -cGCGaCUaCaaGCGGCGGGCGC-CGACg -3'
miRNA:   3'- ucCGC-GA-GcgCGUCGUCCGCGcGCUG- -5'
24101 5' -63.9 NC_005262.1 + 57273 0.67 0.250333
Target:  5'- ---aGCUCGCGCAGCucacGGCcCGCGuGCa -3'
miRNA:   3'- uccgCGAGCGCGUCGu---CCGcGCGC-UG- -5'
24101 5' -63.9 NC_005262.1 + 56737 0.66 0.332871
Target:  5'- cGGCGUUCGacauggccgcCGC-GCuGGCGUcggGCGACg -3'
miRNA:   3'- uCCGCGAGC----------GCGuCGuCCGCG---CGCUG- -5'
24101 5' -63.9 NC_005262.1 + 55004 0.7 0.167334
Target:  5'- aAGGCGacauguacCUCGCGCAcGCGgucGGCGCG-GGCa -3'
miRNA:   3'- -UCCGC--------GAGCGCGU-CGU---CCGCGCgCUG- -5'
24101 5' -63.9 NC_005262.1 + 54788 0.68 0.23834
Target:  5'- aAGGCcaacgacgUCGCGCAGaagauGCGCGCGGCg -3'
miRNA:   3'- -UCCGcg------AGCGCGUCguc--CGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 54127 0.69 0.210457
Target:  5'- cGGUGUUUGCGCAGgAgcGGCaGCGCcaGACa -3'
miRNA:   3'- uCCGCGAGCGCGUCgU--CCG-CGCG--CUG- -5'
24101 5' -63.9 NC_005262.1 + 53916 0.69 0.210457
Target:  5'- -uGCGCgaCGCGCugaAGCAGGCGCagcuCGACc -3'
miRNA:   3'- ucCGCGa-GCGCG---UCGUCCGCGc---GCUG- -5'
24101 5' -63.9 NC_005262.1 + 53245 0.68 0.215799
Target:  5'- cGGCug-CGCGCGGCcGGuCGCGuCGGCa -3'
miRNA:   3'- uCCGcgaGCGCGUCGuCC-GCGC-GCUG- -5'
24101 5' -63.9 NC_005262.1 + 53005 0.82 0.022258
Target:  5'- cGGCaGCUCGCGCAGCAGuaccGCGCGCccGGCg -3'
miRNA:   3'- uCCG-CGAGCGCGUCGUC----CGCGCG--CUG- -5'
24101 5' -63.9 NC_005262.1 + 52822 0.71 0.150839
Target:  5'- cAGGCGCUCGgcgaGCGGCugaAGGCuGCGCu-- -3'
miRNA:   3'- -UCCGCGAGCg---CGUCG---UCCG-CGCGcug -5'
24101 5' -63.9 NC_005262.1 + 52733 0.66 0.317831
Target:  5'- uGGcCGCUCGgGCu-CAGGCGacgcuGCGGCc -3'
miRNA:   3'- uCC-GCGAGCgCGucGUCCGCg----CGCUG- -5'
24101 5' -63.9 NC_005262.1 + 52613 0.72 0.119011
Target:  5'- cGGGCGagcugaaGCGCaccGGCucguGGCGCGCGACc -3'
miRNA:   3'- -UCCGCgag----CGCG---UCGu---CCGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 52585 0.7 0.171704
Target:  5'- cGGCGCggcucUCGaucuuGCAGguGGCGCGC-ACg -3'
miRNA:   3'- uCCGCG-----AGCg----CGUCguCCGCGCGcUG- -5'
24101 5' -63.9 NC_005262.1 + 52394 0.7 0.176628
Target:  5'- cGGCGCg-GCGCGGCuucggcguggagccGCGCGCGAa -3'
miRNA:   3'- uCCGCGagCGCGUCGuc------------CGCGCGCUg -5'
24101 5' -63.9 NC_005262.1 + 52334 0.73 0.093528
Target:  5'- -cGCGCgcgaGCGCGGUAGGCacgaugcgcggGCGCGGCg -3'
miRNA:   3'- ucCGCGag--CGCGUCGUCCG-----------CGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 52218 0.67 0.269248
Target:  5'- cGaGCGCUgGcCGCcgccggcauAGCAGcGCGCGUGAUg -3'
miRNA:   3'- uC-CGCGAgC-GCG---------UCGUC-CGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 51955 0.7 0.163065
Target:  5'- gAGGcCGCUCGCGCGcGCcuGCGCuCGAa -3'
miRNA:   3'- -UCC-GCGAGCGCGU-CGucCGCGcGCUg -5'
24101 5' -63.9 NC_005262.1 + 51677 0.67 0.269248
Target:  5'- cGGCgaucuGCUCGCGC-GCAcGGCgGCGCuGAUu -3'
miRNA:   3'- uCCG-----CGAGCGCGuCGU-CCG-CGCG-CUG- -5'
24101 5' -63.9 NC_005262.1 + 51418 0.67 0.269248
Target:  5'- -cGUGCUCG-GCGGC--GCGCGCGAg -3'
miRNA:   3'- ucCGCGAGCgCGUCGucCGCGCGCUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.