miRNA display CGI


Results 41 - 60 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24101 5' -63.9 NC_005262.1 + 51277 0.66 0.325286
Target:  5'- gAGGCGaucgcgUCGCGCGGCAucugaaGCGCGGu -3'
miRNA:   3'- -UCCGCg-----AGCGCGUCGUccg---CGCGCUg -5'
24101 5' -63.9 NC_005262.1 + 51161 0.72 0.115888
Target:  5'- aAGuCGCcgagCGCGCAGCAGGCaGC-CGACg -3'
miRNA:   3'- -UCcGCGa---GCGCGUCGUCCG-CGcGCUG- -5'
24101 5' -63.9 NC_005262.1 + 50876 0.66 0.308331
Target:  5'- cAGcGCGC-CGCGCagguugucguguccAGCAGGC-CGgGGCu -3'
miRNA:   3'- -UC-CGCGaGCGCG--------------UCGUCCGcGCgCUG- -5'
24101 5' -63.9 NC_005262.1 + 50871 0.66 0.317831
Target:  5'- cAGGUGC-CGaCGCAaucGCAcGGCGCGCc-- -3'
miRNA:   3'- -UCCGCGaGC-GCGU---CGU-CCGCGCGcug -5'
24101 5' -63.9 NC_005262.1 + 50770 0.67 0.262818
Target:  5'- -cGCGCacCGCGUAGCccuuGGCGCGCu-- -3'
miRNA:   3'- ucCGCGa-GCGCGUCGu---CCGCGCGcug -5'
24101 5' -63.9 NC_005262.1 + 50651 0.73 0.096082
Target:  5'- -uGUGC-CGCGCAGC--GCGCGCGGCg -3'
miRNA:   3'- ucCGCGaGCGCGUCGucCGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 50272 0.67 0.275805
Target:  5'- aGGGCGCgccCGCGcCGGCcGaGCcCGUGACg -3'
miRNA:   3'- -UCCGCGa--GCGC-GUCGuC-CGcGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 49630 0.69 0.20062
Target:  5'- cAGGCGCUCGguggccucgcgaucgGCGGCcugcaAGGCG-GCGGCa -3'
miRNA:   3'- -UCCGCGAGCg--------------CGUCG-----UCCGCgCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 49373 0.66 0.303307
Target:  5'- cGGCGacgCGCGCGuucaucaccGCGGGCGuCGCaACu -3'
miRNA:   3'- uCCGCga-GCGCGU---------CGUCCGC-GCGcUG- -5'
24101 5' -63.9 NC_005262.1 + 49303 0.75 0.076123
Target:  5'- gAGGCGUUCcagcaguucaagGCGCAgggcaugaccgacgaGCAGGCGCGCGcCg -3'
miRNA:   3'- -UCCGCGAG------------CGCGU---------------CGUCCGCGCGCuG- -5'
24101 5' -63.9 NC_005262.1 + 49230 0.75 0.075298
Target:  5'- cGGCGg-CGCGCAGUccGCGCGCGAg -3'
miRNA:   3'- uCCGCgaGCGCGUCGucCGCGCGCUg -5'
24101 5' -63.9 NC_005262.1 + 49165 0.69 0.18075
Target:  5'- cAGGcCGCaUCGgcCGCAGCGGcGCGCaCGGCg -3'
miRNA:   3'- -UCC-GCG-AGC--GCGUCGUC-CGCGcGCUG- -5'
24101 5' -63.9 NC_005262.1 + 48769 0.67 0.256513
Target:  5'- cGGCGCgaacauggcaGCGCAGgAcGUGCGCGAg -3'
miRNA:   3'- uCCGCGag--------CGCGUCgUcCGCGCGCUg -5'
24101 5' -63.9 NC_005262.1 + 48647 0.7 0.154819
Target:  5'- aAGGUGCUgaCGCAGCAGGaGCuCGACa -3'
miRNA:   3'- -UCCGCGAgcGCGUCGUCCgCGcGCUG- -5'
24101 5' -63.9 NC_005262.1 + 48470 0.66 0.332871
Target:  5'- cGGauCGCgagcCGCGUGGgcaCGGGCgGCGCGACg -3'
miRNA:   3'- uCC--GCGa---GCGCGUC---GUCCG-CGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 47337 0.66 0.288613
Target:  5'- cGGCGCUCGagaCGCAGCgccagaaAGGC-CGCaugGACc -3'
miRNA:   3'- uCCGCGAGC---GCGUCG-------UCCGcGCG---CUG- -5'
24101 5' -63.9 NC_005262.1 + 47309 0.66 0.332871
Target:  5'- -aGCGcCUCGCccagcucguccgGCAGCGGGauaCGUGCGAUu -3'
miRNA:   3'- ucCGC-GAGCG------------CGUCGUCC---GCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 46981 0.68 0.215799
Target:  5'- cGGCcuGUggGCGaaGGCAuGGCGCGCGACg -3'
miRNA:   3'- uCCG--CGagCGCg-UCGU-CCGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 46899 0.73 0.092775
Target:  5'- cGGUGCggGCGguGCGguguggugcggcccGGCGCGCGGCc -3'
miRNA:   3'- uCCGCGagCGCguCGU--------------CCGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 46728 0.68 0.215799
Target:  5'- cGGGCGCgccuaUCgGCGCcGU--GCGCGCGACg -3'
miRNA:   3'- -UCCGCG-----AG-CGCGuCGucCGCGCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.