miRNA display CGI


Results 61 - 80 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24101 5' -63.9 NC_005262.1 + 46532 0.7 0.167334
Target:  5'- uAGGUG-UCGCGCAGCucgaacAGGCGCGUc-- -3'
miRNA:   3'- -UCCGCgAGCGCGUCG------UCCGCGCGcug -5'
24101 5' -63.9 NC_005262.1 + 46524 0.69 0.205229
Target:  5'- --cUGCcCGCGCAGCAGcccaGCGCGGCg -3'
miRNA:   3'- uccGCGaGCGCGUCGUCcg--CGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 46294 0.66 0.332871
Target:  5'- cAGGCuGCcgaucgacgcgUCGCGC-GC-GGCGCGCG-Cu -3'
miRNA:   3'- -UCCG-CG-----------AGCGCGuCGuCCGCGCGCuG- -5'
24101 5' -63.9 NC_005262.1 + 46233 0.67 0.256513
Target:  5'- cGGC-UUCGCGCGccgccGCGGcugccgccucGCGCGCGACc -3'
miRNA:   3'- uCCGcGAGCGCGU-----CGUC----------CGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 46176 0.68 0.226833
Target:  5'- cGGCgaGCUCGCGCuGCuGGCGCuccagcuccGCGcGCu -3'
miRNA:   3'- uCCG--CGAGCGCGuCGuCCGCG---------CGC-UG- -5'
24101 5' -63.9 NC_005262.1 + 45629 0.8 0.029439
Target:  5'- gGGGCGCUCGCGCgaucaGGCGGGCaCGCG-Cu -3'
miRNA:   3'- -UCCGCGAGCGCG-----UCGUCCGcGCGCuG- -5'
24101 5' -63.9 NC_005262.1 + 45398 0.73 0.106971
Target:  5'- gAGGCGCUCGgaagcCGguGCGGGuCGUGCaACg -3'
miRNA:   3'- -UCCGCGAGC-----GCguCGUCC-GCGCGcUG- -5'
24101 5' -63.9 NC_005262.1 + 45396 0.69 0.185429
Target:  5'- uGGGCGg-CGCaGCAGCAGGCaGcCGCG-Ca -3'
miRNA:   3'- -UCCGCgaGCG-CGUCGUCCG-C-GCGCuG- -5'
24101 5' -63.9 NC_005262.1 + 45157 0.78 0.042265
Target:  5'- aAGGCGCUCGCGCuGCGuGCGgaCGCGAUc -3'
miRNA:   3'- -UCCGCGAGCGCGuCGUcCGC--GCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 44974 0.74 0.088612
Target:  5'- gAGGCGagggccgaCGUGCAGCAGucCGCGCGGCa -3'
miRNA:   3'- -UCCGCga------GCGCGUCGUCc-GCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 44775 0.67 0.275805
Target:  5'- --uCGCcagCGCGCGGCAGGCcgaGCuCGACg -3'
miRNA:   3'- uccGCGa--GCGCGUCGUCCG---CGcGCUG- -5'
24101 5' -63.9 NC_005262.1 + 44151 0.74 0.091039
Target:  5'- cGGaCGCgCGCGCgaucgGGCAGGaGCGCGGCg -3'
miRNA:   3'- uCC-GCGaGCGCG-----UCGUCCgCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 43874 0.69 0.188768
Target:  5'- cGGCGCgaucgCGCGCauGGCcgacaugaagucgaAGGCgucaGCGCGGCg -3'
miRNA:   3'- uCCGCGa----GCGCG--UCG--------------UCCG----CGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 43837 0.74 0.088612
Target:  5'- cGGGCcgGCcgCGCGCGGCGGuGCGC-CGGCa -3'
miRNA:   3'- -UCCG--CGa-GCGCGUCGUC-CGCGcGCUG- -5'
24101 5' -63.9 NC_005262.1 + 43347 0.69 0.195109
Target:  5'- cGGCGaUCGaCGCGGCgaAGGCGCacaaCGACa -3'
miRNA:   3'- uCCGCgAGC-GCGUCG--UCCGCGc---GCUG- -5'
24101 5' -63.9 NC_005262.1 + 41608 0.67 0.262818
Target:  5'- uGGCGCUCaGgGCAGCGGaaCG-GUGACg -3'
miRNA:   3'- uCCGCGAG-CgCGUCGUCc-GCgCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 41547 0.68 0.232527
Target:  5'- cGGCGUgauGCGCAggccggccggcGUGGGCGgCGCGGCc -3'
miRNA:   3'- uCCGCGag-CGCGU-----------CGUCCGC-GCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 40724 0.66 0.332871
Target:  5'- cGGCGCUgaCGCccucgaGCA-CGGGCG-GCGGCg -3'
miRNA:   3'- uCCGCGA--GCG------CGUcGUCCGCgCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 40508 0.69 0.205229
Target:  5'- uGGCGaaCGaCGgGGCGGGCGUgaagaaGCGACg -3'
miRNA:   3'- uCCGCgaGC-GCgUCGUCCGCG------CGCUG- -5'
24101 5' -63.9 NC_005262.1 + 40493 0.66 0.296239
Target:  5'- uGGCGgaCGgGCAGaacGGCaccaucgaccuGCGCGACa -3'
miRNA:   3'- uCCGCgaGCgCGUCgu-CCG-----------CGCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.