miRNA display CGI


Results 81 - 100 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24101 5' -63.9 NC_005262.1 + 40398 0.7 0.167334
Target:  5'- -cGCGUUCGCGCGGauuCAGccGCGCGuCGGCg -3'
miRNA:   3'- ucCGCGAGCGCGUC---GUC--CGCGC-GCUG- -5'
24101 5' -63.9 NC_005262.1 + 40235 0.72 0.121889
Target:  5'- -uGCGCccgCGCGCGGCGGGCgguuggucagucuGCGCGGu -3'
miRNA:   3'- ucCGCGa--GCGCGUCGUCCG-------------CGCGCUg -5'
24101 5' -63.9 NC_005262.1 + 40139 0.66 0.310504
Target:  5'- cGaCGCUCGCGCugcaacccGGaCAGG-GUGCGGCg -3'
miRNA:   3'- uCcGCGAGCGCG--------UC-GUCCgCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 39719 0.81 0.024208
Target:  5'- uGGUGUgaUCGCGCAGCAGGCGCaGCG-Ca -3'
miRNA:   3'- uCCGCG--AGCGCGUCGUCCGCG-CGCuG- -5'
24101 5' -63.9 NC_005262.1 + 39616 0.66 0.317831
Target:  5'- cGGGCGUgaacUCGC-CGgggaacguGCAGGCGUGCGcCu -3'
miRNA:   3'- -UCCGCG----AGCGcGU--------CGUCCGCGCGCuG- -5'
24101 5' -63.9 NC_005262.1 + 39337 0.66 0.303307
Target:  5'- -cGUGC-CGUGCAGCgccaucgaucGGGCGUGaCGGCu -3'
miRNA:   3'- ucCGCGaGCGCGUCG----------UCCGCGC-GCUG- -5'
24101 5' -63.9 NC_005262.1 + 38854 0.69 0.18075
Target:  5'- uGGGCGCgcCGCGCGGCcauGUGCGCa-- -3'
miRNA:   3'- -UCCGCGa-GCGCGUCGuc-CGCGCGcug -5'
24101 5' -63.9 NC_005262.1 + 38560 0.66 0.325286
Target:  5'- cGGCGUUgCGCGCGGUucGGGCGgaaG-GGCa -3'
miRNA:   3'- uCCGCGA-GCGCGUCG--UCCGCg--CgCUG- -5'
24101 5' -63.9 NC_005262.1 + 38318 0.71 0.143157
Target:  5'- cGGCcUUCGUGCAGUuGGCGaGCGGCa -3'
miRNA:   3'- uCCGcGAGCGCGUCGuCCGCgCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 37909 0.66 0.296239
Target:  5'- uGGCGCgggcuauaUCGCGUGGacgauuGGCGCGCaugGACc -3'
miRNA:   3'- uCCGCG--------AGCGCGUCgu----CCGCGCG---CUG- -5'
24101 5' -63.9 NC_005262.1 + 36805 0.7 0.176175
Target:  5'- -aGUGCggCGCGCucGGCGGGCGUgaGCGAUg -3'
miRNA:   3'- ucCGCGa-GCGCG--UCGUCCGCG--CGCUG- -5'
24101 5' -63.9 NC_005262.1 + 36727 0.72 0.122213
Target:  5'- uGGGgGCUgGCGCcGCGGGCGCaguucuGCGcACg -3'
miRNA:   3'- -UCCgCGAgCGCGuCGUCCGCG------CGC-UG- -5'
24101 5' -63.9 NC_005262.1 + 36718 0.66 0.317831
Target:  5'- gAGGCggaugucgccgaGCUCGCGCAcgaacGCGuaGCGCGUGAg -3'
miRNA:   3'- -UCCG------------CGAGCGCGU-----CGUc-CGCGCGCUg -5'
24101 5' -63.9 NC_005262.1 + 36471 0.68 0.215799
Target:  5'- uGGGCGCgCGCGaGGCuGGCGgacauCGCGAa -3'
miRNA:   3'- -UCCGCGaGCGCgUCGuCCGC-----GCGCUg -5'
24101 5' -63.9 NC_005262.1 + 35507 0.66 0.325286
Target:  5'- -cGCGCUUGCGC-GCauAGGCGacagcgccggcCGUGACg -3'
miRNA:   3'- ucCGCGAGCGCGuCG--UCCGC-----------GCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 35238 0.67 0.256513
Target:  5'- cGGCGCgaUCG-GCAGCggcuGGGCGCcccCGGCg -3'
miRNA:   3'- uCCGCG--AGCgCGUCG----UCCGCGc--GCUG- -5'
24101 5' -63.9 NC_005262.1 + 34993 0.66 0.317831
Target:  5'- cAGGCaGC-CGgGCAGCAG-CGCG-GGCc -3'
miRNA:   3'- -UCCG-CGaGCgCGUCGUCcGCGCgCUG- -5'
24101 5' -63.9 NC_005262.1 + 34479 0.82 0.022258
Target:  5'- cGGCGUUcgagcacaucCGCGCGGC-GGCGCGCGACu -3'
miRNA:   3'- uCCGCGA----------GCGCGUCGuCCGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 34104 0.74 0.087186
Target:  5'- cGGGCGgUUGCGCaggauucgcggguugGGCGGGCuGCGCGGg -3'
miRNA:   3'- -UCCGCgAGCGCG---------------UCGUCCG-CGCGCUg -5'
24101 5' -63.9 NC_005262.1 + 33927 0.73 0.104145
Target:  5'- cGGUGC-CGagcuCGCGGCGGGCaCGCGGCa -3'
miRNA:   3'- uCCGCGaGC----GCGUCGUCCGcGCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.