miRNA display CGI


Results 41 - 60 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24101 5' -63.9 NC_005262.1 + 45157 0.78 0.042265
Target:  5'- aAGGCGCUCGCGCuGCGuGCGgaCGCGAUc -3'
miRNA:   3'- -UCCGCGAGCGCGuCGUcCGC--GCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 15588 0.79 0.035778
Target:  5'- gAGGCGCgcgCGCGCgAGgAGcGCGUGCGGCa -3'
miRNA:   3'- -UCCGCGa--GCGCG-UCgUC-CGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 12805 0.8 0.028628
Target:  5'- uGGGCGg-CGCGCAGCcGGCGCGUGAa -3'
miRNA:   3'- -UCCGCgaGCGCGUCGuCCGCGCGCUg -5'
24101 5' -63.9 NC_005262.1 + 39719 0.81 0.024208
Target:  5'- uGGUGUgaUCGCGCAGCAGGCGCaGCG-Ca -3'
miRNA:   3'- uCCGCG--AGCGCGUCGUCCGCG-CGCuG- -5'
24101 5' -63.9 NC_005262.1 + 34479 0.82 0.022258
Target:  5'- cGGCGUUcgagcacaucCGCGCGGC-GGCGCGCGACu -3'
miRNA:   3'- uCCGCGA----------GCGCGUCGuCCGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 5063 0.74 0.077376
Target:  5'- cGGGCagGCcCGCgGCGGCGGcGCGUGCGACc -3'
miRNA:   3'- -UCCG--CGaGCG-CGUCGUC-CGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 26152 0.74 0.086247
Target:  5'- uGGGUGCUccaaCGCGUcgAGCAcgaguGGCGCGCGAUc -3'
miRNA:   3'- -UCCGCGA----GCGCG--UCGU-----CCGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 23324 0.71 0.132303
Target:  5'- aAGGCGC-CGCGCacgAGCAcGCGCuCGACc -3'
miRNA:   3'- -UCCGCGaGCGCG---UCGUcCGCGcGCUG- -5'
24101 5' -63.9 NC_005262.1 + 22480 0.72 0.122213
Target:  5'- -aGCGCgaaGCGCugaAGCuGGCGCGCGAg -3'
miRNA:   3'- ucCGCGag-CGCG---UCGuCCGCGCGCUg -5'
24101 5' -63.9 NC_005262.1 + 36727 0.72 0.122213
Target:  5'- uGGGgGCUgGCGCcGCGGGCGCaguucuGCGcACg -3'
miRNA:   3'- -UCCgCGAgCGCGuCGUCCGCG------CGC-UG- -5'
24101 5' -63.9 NC_005262.1 + 52613 0.72 0.119011
Target:  5'- cGGGCGagcugaaGCGCaccGGCucguGGCGCGCGACc -3'
miRNA:   3'- -UCCGCgag----CGCG---UCGu---CCGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 51161 0.72 0.115888
Target:  5'- aAGuCGCcgagCGCGCAGCAGGCaGC-CGACg -3'
miRNA:   3'- -UCcGCGa---GCGCGUCGUCCG-CGcGCUG- -5'
24101 5' -63.9 NC_005262.1 + 21739 0.73 0.106971
Target:  5'- aAGGCGCucacggaagaUCGCGCAGC-GGCaCGCGuCa -3'
miRNA:   3'- -UCCGCG----------AGCGCGUCGuCCGcGCGCuG- -5'
24101 5' -63.9 NC_005262.1 + 33927 0.73 0.104145
Target:  5'- cGGUGC-CGagcuCGCGGCGGGCaCGCGGCa -3'
miRNA:   3'- uCCGCGaGC----GCGUCGUCCGcGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 11415 0.73 0.101389
Target:  5'- -cGCGC-CGCGCcgGGCcgccgaAGGUGCGCGACa -3'
miRNA:   3'- ucCGCGaGCGCG--UCG------UCCGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 44151 0.74 0.091039
Target:  5'- cGGaCGCgCGCGCgaucgGGCAGGaGCGCGGCg -3'
miRNA:   3'- uCC-GCGaGCGCG-----UCGUCCgCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 43837 0.74 0.088612
Target:  5'- cGGGCcgGCcgCGCGCGGCGGuGCGC-CGGCa -3'
miRNA:   3'- -UCCG--CGa-GCGCGUCGUC-CGCGcGCUG- -5'
24101 5' -63.9 NC_005262.1 + 44974 0.74 0.088612
Target:  5'- gAGGCGagggccgaCGUGCAGCAGucCGCGCGGCa -3'
miRNA:   3'- -UCCGCga------GCGCGUCGUCc-GCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 18726 0.74 0.088612
Target:  5'- aAGGCGCUCcucagcuucgGCGCGGCucGGCGCGUcguaGAUg -3'
miRNA:   3'- -UCCGCGAG----------CGCGUCGu-CCGCGCG----CUG- -5'
24101 5' -63.9 NC_005262.1 + 24731 0.74 0.086247
Target:  5'- -cGCGCUgGCGCGcGCGaucGGCGUGCGGCc -3'
miRNA:   3'- ucCGCGAgCGCGU-CGU---CCGCGCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.