miRNA display CGI


Results 61 - 80 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24101 5' -63.9 NC_005262.1 + 43837 0.74 0.088612
Target:  5'- cGGGCcgGCcgCGCGCGGCGGuGCGC-CGGCa -3'
miRNA:   3'- -UCCG--CGa-GCGCGUCGUC-CGCGcGCUG- -5'
24101 5' -63.9 NC_005262.1 + 44151 0.74 0.091039
Target:  5'- cGGaCGCgCGCGCgaucgGGCAGGaGCGCGGCg -3'
miRNA:   3'- uCC-GCGaGCGCG-----UCGUCCgCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 17557 0.71 0.139451
Target:  5'- gAGGCGgcaGcCGCGGC-GGCGCGCGAa -3'
miRNA:   3'- -UCCGCgagC-GCGUCGuCCGCGCGCUg -5'
24101 5' -63.9 NC_005262.1 + 52822 0.71 0.150839
Target:  5'- cAGGCGCUCGgcgaGCGGCugaAGGCuGCGCu-- -3'
miRNA:   3'- -UCCGCGAGCg---CGUCG---UCCG-CGCGcug -5'
24101 5' -63.9 NC_005262.1 + 29417 0.7 0.153615
Target:  5'- cGaCGCUCGaggaGCAGCAGGCGaaggcccgcaaggcUGCGGCa -3'
miRNA:   3'- uCcGCGAGCg---CGUCGUCCGC--------------GCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 48647 0.7 0.154819
Target:  5'- aAGGUGCUgaCGCAGCAGGaGCuCGACa -3'
miRNA:   3'- -UCCGCGAgcGCGUCGUCCgCGcGCUG- -5'
24101 5' -63.9 NC_005262.1 + 15886 0.7 0.158893
Target:  5'- uGGCGCUgaucCGCcGCGuGCGCGCGACg -3'
miRNA:   3'- uCCGCGAgc--GCGuCGUcCGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 12478 0.7 0.158893
Target:  5'- gGGGCGC-CGCGCGGCAuaCGCaGUGAg -3'
miRNA:   3'- -UCCGCGaGCGCGUCGUccGCG-CGCUg -5'
24101 5' -63.9 NC_005262.1 + 11874 0.7 0.163065
Target:  5'- cGGCGacguguaUCGCGCgaaAGguGGC-CGCGGCa -3'
miRNA:   3'- uCCGCg------AGCGCG---UCguCCGcGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 51955 0.7 0.163065
Target:  5'- gAGGcCGCUCGCGCGcGCcuGCGCuCGAa -3'
miRNA:   3'- -UCC-GCGAGCGCGU-CGucCGCGcGCUg -5'
24101 5' -63.9 NC_005262.1 + 60060 0.71 0.135834
Target:  5'- cGGCGUUCauccuGCGCAacGCc-GCGCGCGACg -3'
miRNA:   3'- uCCGCGAG-----CGCGU--CGucCGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 28167 0.71 0.132303
Target:  5'- cGGCGCaacugCGCGCGGC-GGC-CGuCGACa -3'
miRNA:   3'- uCCGCGa----GCGCGUCGuCCGcGC-GCUG- -5'
24101 5' -63.9 NC_005262.1 + 11415 0.73 0.101389
Target:  5'- -cGCGC-CGCGCcgGGCcgccgaAGGUGCGCGACa -3'
miRNA:   3'- ucCGCGaGCGCG--UCG------UCCGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 33927 0.73 0.104145
Target:  5'- cGGUGC-CGagcuCGCGGCGGGCaCGCGGCa -3'
miRNA:   3'- uCCGCGaGC----GCGUCGUCCGcGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 21739 0.73 0.106971
Target:  5'- aAGGCGCucacggaagaUCGCGCAGC-GGCaCGCGuCa -3'
miRNA:   3'- -UCCGCG----------AGCGCGUCGuCCGcGCGCuG- -5'
24101 5' -63.9 NC_005262.1 + 51161 0.72 0.115888
Target:  5'- aAGuCGCcgagCGCGCAGCAGGCaGC-CGACg -3'
miRNA:   3'- -UCcGCGa---GCGCGUCGUCCG-CGcGCUG- -5'
24101 5' -63.9 NC_005262.1 + 52613 0.72 0.119011
Target:  5'- cGGGCGagcugaaGCGCaccGGCucguGGCGCGCGACc -3'
miRNA:   3'- -UCCGCgag----CGCG---UCGu---CCGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 36727 0.72 0.122213
Target:  5'- uGGGgGCUgGCGCcGCGGGCGCaguucuGCGcACg -3'
miRNA:   3'- -UCCgCGAgCGCGuCGUCCGCG------CGC-UG- -5'
24101 5' -63.9 NC_005262.1 + 22480 0.72 0.122213
Target:  5'- -aGCGCgaaGCGCugaAGCuGGCGCGCGAg -3'
miRNA:   3'- ucCGCGag-CGCG---UCGuCCGCGCGCUg -5'
24101 5' -63.9 NC_005262.1 + 23324 0.71 0.132303
Target:  5'- aAGGCGC-CGCGCacgAGCAcGCGCuCGACc -3'
miRNA:   3'- -UCCGCGaGCGCG---UCGUcCGCGcGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.