Results 81 - 100 of 199 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24101 | 5' | -63.9 | NC_005262.1 | + | 58633 | 0.7 | 0.167334 |
Target: 5'- cAGGCucgGCagUCGaGCGGcCGGGCGCGCGAg -3' miRNA: 3'- -UCCG---CG--AGCgCGUC-GUCCGCGCGCUg -5' |
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24101 | 5' | -63.9 | NC_005262.1 | + | 49165 | 0.69 | 0.18075 |
Target: 5'- cAGGcCGCaUCGgcCGCAGCGGcGCGCaCGGCg -3' miRNA: 3'- -UCC-GCG-AGC--GCGUCGUC-CGCGcGCUG- -5' |
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24101 | 5' | -63.9 | NC_005262.1 | + | 45396 | 0.69 | 0.185429 |
Target: 5'- uGGGCGg-CGCaGCAGCAGGCaGcCGCG-Ca -3' miRNA: 3'- -UCCGCgaGCG-CGUCGUCCG-C-GCGCuG- -5' |
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24101 | 5' | -63.9 | NC_005262.1 | + | 62712 | 0.69 | 0.185429 |
Target: 5'- uGGGUaaUCGCGCAcGCAcccugaucGGCGCGCuGGCg -3' miRNA: 3'- -UCCGcgAGCGCGU-CGU--------CCGCGCG-CUG- -5' |
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24101 | 5' | -63.9 | NC_005262.1 | + | 32291 | 0.69 | 0.185429 |
Target: 5'- cGGCGCgggCGCGaacgucgaGGCAGcGCGUGCG-Cu -3' miRNA: 3'- uCCGCGa--GCGCg-------UCGUC-CGCGCGCuG- -5' |
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24101 | 5' | -63.9 | NC_005262.1 | + | 43874 | 0.69 | 0.188768 |
Target: 5'- cGGCGCgaucgCGCGCauGGCcgacaugaagucgaAGGCgucaGCGCGGCg -3' miRNA: 3'- uCCGCGa----GCGCG--UCG--------------UCCG----CGCGCUG- -5' |
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24101 | 5' | -63.9 | NC_005262.1 | + | 13686 | 0.69 | 0.190215 |
Target: 5'- --aCGCgCGCGguGCuGGCGCGUGAg -3' miRNA: 3'- uccGCGaGCGCguCGuCCGCGCGCUg -5' |
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24101 | 5' | -63.9 | NC_005262.1 | + | 51955 | 0.7 | 0.163065 |
Target: 5'- gAGGcCGCUCGCGCGcGCcuGCGCuCGAa -3' miRNA: 3'- -UCC-GCGAGCGCGU-CGucCGCGcGCUg -5' |
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24101 | 5' | -63.9 | NC_005262.1 | + | 11874 | 0.7 | 0.163065 |
Target: 5'- cGGCGacguguaUCGCGCgaaAGguGGC-CGCGGCa -3' miRNA: 3'- uCCGCg------AGCGCG---UCguCCGcGCGCUG- -5' |
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24101 | 5' | -63.9 | NC_005262.1 | + | 12478 | 0.7 | 0.158893 |
Target: 5'- gGGGCGC-CGCGCGGCAuaCGCaGUGAg -3' miRNA: 3'- -UCCGCGaGCGCGUCGUccGCG-CGCUg -5' |
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24101 | 5' | -63.9 | NC_005262.1 | + | 22480 | 0.72 | 0.122213 |
Target: 5'- -aGCGCgaaGCGCugaAGCuGGCGCGCGAg -3' miRNA: 3'- ucCGCGag-CGCG---UCGuCCGCGCGCUg -5' |
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24101 | 5' | -63.9 | NC_005262.1 | + | 23324 | 0.71 | 0.132303 |
Target: 5'- aAGGCGC-CGCGCacgAGCAcGCGCuCGACc -3' miRNA: 3'- -UCCGCGaGCGCG---UCGUcCGCGcGCUG- -5' |
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24101 | 5' | -63.9 | NC_005262.1 | + | 28167 | 0.71 | 0.132303 |
Target: 5'- cGGCGCaacugCGCGCGGC-GGC-CGuCGACa -3' miRNA: 3'- uCCGCGa----GCGCGUCGuCCGcGC-GCUG- -5' |
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24101 | 5' | -63.9 | NC_005262.1 | + | 60060 | 0.71 | 0.135834 |
Target: 5'- cGGCGUUCauccuGCGCAacGCc-GCGCGCGACg -3' miRNA: 3'- uCCGCGAG-----CGCGU--CGucCGCGCGCUG- -5' |
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24101 | 5' | -63.9 | NC_005262.1 | + | 17557 | 0.71 | 0.139451 |
Target: 5'- gAGGCGgcaGcCGCGGC-GGCGCGCGAa -3' miRNA: 3'- -UCCGCgagC-GCGUCGuCCGCGCGCUg -5' |
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24101 | 5' | -63.9 | NC_005262.1 | + | 52822 | 0.71 | 0.150839 |
Target: 5'- cAGGCGCUCGgcgaGCGGCugaAGGCuGCGCu-- -3' miRNA: 3'- -UCCGCGAGCg---CGUCG---UCCG-CGCGcug -5' |
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24101 | 5' | -63.9 | NC_005262.1 | + | 29417 | 0.7 | 0.153615 |
Target: 5'- cGaCGCUCGaggaGCAGCAGGCGaaggcccgcaaggcUGCGGCa -3' miRNA: 3'- uCcGCGAGCg---CGUCGUCCGC--------------GCGCUG- -5' |
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24101 | 5' | -63.9 | NC_005262.1 | + | 48647 | 0.7 | 0.154819 |
Target: 5'- aAGGUGCUgaCGCAGCAGGaGCuCGACa -3' miRNA: 3'- -UCCGCGAgcGCGUCGUCCgCGcGCUG- -5' |
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24101 | 5' | -63.9 | NC_005262.1 | + | 15886 | 0.7 | 0.158893 |
Target: 5'- uGGCGCUgaucCGCcGCGuGCGCGCGACg -3' miRNA: 3'- uCCGCGAgc--GCGuCGUcCGCGCGCUG- -5' |
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24101 | 5' | -63.9 | NC_005262.1 | + | 24871 | 0.69 | 0.195109 |
Target: 5'- cGGCGa-UGUGCAuccGCcGGCGCGUGACa -3' miRNA: 3'- uCCGCgaGCGCGU---CGuCCGCGCGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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