miRNA display CGI


Results 21 - 40 of 199 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24101 5' -63.9 NC_005262.1 + 8146 0.66 0.303307
Target:  5'- cGGCGUgccgGaCGCGGCcacGaGCGCGCGGCc -3'
miRNA:   3'- uCCGCGag--C-GCGUCGu--C-CGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 50876 0.66 0.308331
Target:  5'- cAGcGCGC-CGCGCagguugucguguccAGCAGGC-CGgGGCu -3'
miRNA:   3'- -UC-CGCGaGCGCG--------------UCGUCCGcGCgCUG- -5'
24101 5' -63.9 NC_005262.1 + 21535 0.66 0.325286
Target:  5'- uGcCGCUCGuCGCcGCAGuGaGCGCGGCg -3'
miRNA:   3'- uCcGCGAGC-GCGuCGUC-CgCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 47309 0.66 0.332871
Target:  5'- -aGCGcCUCGCccagcucguccgGCAGCGGGauaCGUGCGAUu -3'
miRNA:   3'- ucCGC-GAGCG------------CGUCGUCC---GCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 1061 0.68 0.23834
Target:  5'- cGGCGCUgaccgccagCGCGCcgaucaGGguGcGUGCGCGAUu -3'
miRNA:   3'- uCCGCGA---------GCGCG------UCguC-CGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 52218 0.67 0.269248
Target:  5'- cGaGCGCUgGcCGCcgccggcauAGCAGcGCGCGUGAUg -3'
miRNA:   3'- uC-CGCGAgC-GCG---------UCGUC-CGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 52733 0.66 0.317831
Target:  5'- uGGcCGCUCGgGCu-CAGGCGacgcuGCGGCc -3'
miRNA:   3'- uCC-GCGAGCgCGucGUCCGCg----CGCUG- -5'
24101 5' -63.9 NC_005262.1 + 63699 0.66 0.332871
Target:  5'- cGGUGaCaUGCGCAGaa-GCGUGCGGCg -3'
miRNA:   3'- uCCGC-GaGCGCGUCgucCGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 51677 0.67 0.269248
Target:  5'- cGGCgaucuGCUCGCGC-GCAcGGCgGCGCuGAUu -3'
miRNA:   3'- uCCG-----CGAGCGCGuCGU-CCG-CGCG-CUG- -5'
24101 5' -63.9 NC_005262.1 + 15661 0.66 0.332871
Target:  5'- aGGGCGaacuucggaUCGaCGCcgAGCucuuGCGCGCGGCg -3'
miRNA:   3'- -UCCGCg--------AGC-GCG--UCGuc--CGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 30465 0.66 0.317831
Target:  5'- cGGUGC-CGCGCAGCGacgcaguuGCGUcCGACu -3'
miRNA:   3'- uCCGCGaGCGCGUCGUc-------CGCGcGCUG- -5'
24101 5' -63.9 NC_005262.1 + 2983 0.66 0.303307
Target:  5'- cGGCGCaaacUCuGCGaCAGCGGaacgcgcaGCGUGUGACu -3'
miRNA:   3'- uCCGCG----AG-CGC-GUCGUC--------CGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 27513 0.66 0.317831
Target:  5'- gAGGUGUUCGCGUcGCc-GCGCGCc-- -3'
miRNA:   3'- -UCCGCGAGCGCGuCGucCGCGCGcug -5'
24101 5' -63.9 NC_005262.1 + 36718 0.66 0.317831
Target:  5'- gAGGCggaugucgccgaGCUCGCGCAcgaacGCGuaGCGCGUGAg -3'
miRNA:   3'- -UCCG------------CGAGCGCGU-----CGUc-CGCGCGCUg -5'
24101 5' -63.9 NC_005262.1 + 35507 0.66 0.325286
Target:  5'- -cGCGCUUGCGC-GCauAGGCGacagcgccggcCGUGACg -3'
miRNA:   3'- ucCGCGAGCGCGuCG--UCCGC-----------GCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 30501 0.66 0.332871
Target:  5'- cGGC-UUCgGCGCccGGCGuGCGCGCGAUg -3'
miRNA:   3'- uCCGcGAG-CGCG--UCGUcCGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 46176 0.68 0.226833
Target:  5'- cGGCgaGCUCGCGCuGCuGGCGCuccagcuccGCGcGCu -3'
miRNA:   3'- uCCG--CGAGCGCGuCGuCCGCG---------CGC-UG- -5'
24101 5' -63.9 NC_005262.1 + 41547 0.68 0.232527
Target:  5'- cGGCGUgauGCGCAggccggccggcGUGGGCGgCGCGGCc -3'
miRNA:   3'- uCCGCGag-CGCGU-----------CGUCCGC-GCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 13231 0.67 0.250333
Target:  5'- cGG-GCUCGgGCuGCgguugaacGGGUGCGCGAg -3'
miRNA:   3'- uCCgCGAGCgCGuCG--------UCCGCGCGCUg -5'
24101 5' -63.9 NC_005262.1 + 50770 0.67 0.262818
Target:  5'- -cGCGCacCGCGUAGCccuuGGCGCGCu-- -3'
miRNA:   3'- ucCGCGa-GCGCGUCGu---CCGCGCGcug -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.