miRNA display CGI


Results 41 - 60 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24101 5' -63.9 NC_005262.1 + 4892 0.68 0.23834
Target:  5'- cGGGcCGCcggccugaUCGCGCAGCGcGGCagcagccaacGCGCGGa -3'
miRNA:   3'- -UCC-GCG--------AGCGCGUCGU-CCG----------CGCGCUg -5'
24101 5' -63.9 NC_005262.1 + 52733 0.66 0.317831
Target:  5'- uGGcCGCUCGgGCu-CAGGCGacgcuGCGGCc -3'
miRNA:   3'- uCC-GCGAGCgCGucGUCCGCg----CGCUG- -5'
24101 5' -63.9 NC_005262.1 + 63699 0.66 0.332871
Target:  5'- cGGUGaCaUGCGCAGaa-GCGUGCGGCg -3'
miRNA:   3'- uCCGC-GaGCGCGUCgucCGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 8835 0.68 0.244275
Target:  5'- uGGCGCgcuucugguuuUCGCGCAGguugaaGCGCaGCGACa -3'
miRNA:   3'- uCCGCG-----------AGCGCGUCguc---CGCG-CGCUG- -5'
24101 5' -63.9 NC_005262.1 + 15661 0.66 0.332871
Target:  5'- aGGGCGaacuucggaUCGaCGCcgAGCucuuGCGCGCGGCg -3'
miRNA:   3'- -UCCGCg--------AGC-GCG--UCGuc--CGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 52585 0.7 0.171704
Target:  5'- cGGCGCggcucUCGaucuuGCAGguGGCGCGC-ACg -3'
miRNA:   3'- uCCGCG-----AGCg----CGUCguCCGCGCGcUG- -5'
24101 5' -63.9 NC_005262.1 + 30501 0.66 0.332871
Target:  5'- cGGC-UUCgGCGCccGGCGuGCGCGCGAUg -3'
miRNA:   3'- uCCGcGAG-CGCG--UCGUcCGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 3315 0.7 0.177993
Target:  5'- cGGCGUcucgcccugaUCGCGCAGCgucauguagagcgacAGGCGCaGCG-Cg -3'
miRNA:   3'- uCCGCG----------AGCGCGUCG---------------UCCGCG-CGCuG- -5'
24101 5' -63.9 NC_005262.1 + 59211 0.69 0.190215
Target:  5'- cGGGCGCUCaCGCccgAGCAGcGCcgccgcugGCGCGAg -3'
miRNA:   3'- -UCCGCGAGcGCG---UCGUC-CG--------CGCGCUg -5'
24101 5' -63.9 NC_005262.1 + 13202 0.68 0.215799
Target:  5'- -aGCGCUCGCGCuacCGGGUugaGCGGCa -3'
miRNA:   3'- ucCGCGAGCGCGuc-GUCCGcg-CGCUG- -5'
24101 5' -63.9 NC_005262.1 + 59473 0.68 0.220706
Target:  5'- cGGCccgcgagGCUCGcCGUAGUcgacgaugagGGGCGCGUGAUu -3'
miRNA:   3'- uCCG-------CGAGC-GCGUCG----------UCCGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 46176 0.68 0.226833
Target:  5'- cGGCgaGCUCGCGCuGCuGGCGCuccagcuccGCGcGCu -3'
miRNA:   3'- uCCG--CGAGCGCGuCGuCCGCG---------CGC-UG- -5'
24101 5' -63.9 NC_005262.1 + 41547 0.68 0.232527
Target:  5'- cGGCGUgauGCGCAggccggccggcGUGGGCGgCGCGGCc -3'
miRNA:   3'- uCCGCGag-CGCGU-----------CGUCCGC-GCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 9368 0.67 0.262818
Target:  5'- cGGCGCgCGCgGCGGCcuGCGCcuccGCGAg -3'
miRNA:   3'- uCCGCGaGCG-CGUCGucCGCG----CGCUg -5'
24101 5' -63.9 NC_005262.1 + 51677 0.67 0.269248
Target:  5'- cGGCgaucuGCUCGCGC-GCAcGGCgGCGCuGAUu -3'
miRNA:   3'- uCCG-----CGAGCGCGuCGU-CCG-CGCG-CUG- -5'
24101 5' -63.9 NC_005262.1 + 8146 0.66 0.303307
Target:  5'- cGGCGUgccgGaCGCGGCcacGaGCGCGCGGCc -3'
miRNA:   3'- uCCGCGag--C-GCGUCGu--C-CGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 50876 0.66 0.308331
Target:  5'- cAGcGCGC-CGCGCagguugucguguccAGCAGGC-CGgGGCu -3'
miRNA:   3'- -UC-CGCGaGCGCG--------------UCGUCCGcGCgCUG- -5'
24101 5' -63.9 NC_005262.1 + 27513 0.66 0.317831
Target:  5'- gAGGUGUUCGCGUcGCc-GCGCGCc-- -3'
miRNA:   3'- -UCCGCGAGCGCGuCGucCGCGCGcug -5'
24101 5' -63.9 NC_005262.1 + 36718 0.66 0.317831
Target:  5'- gAGGCggaugucgccgaGCUCGCGCAcgaacGCGuaGCGCGUGAg -3'
miRNA:   3'- -UCCG------------CGAGCGCGU-----CGUc-CGCGCGCUg -5'
24101 5' -63.9 NC_005262.1 + 35507 0.66 0.325286
Target:  5'- -cGCGCUUGCGC-GCauAGGCGacagcgccggcCGUGACg -3'
miRNA:   3'- ucCGCGAGCGCGuCG--UCCGC-----------GCGCUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.