miRNA display CGI


Results 61 - 80 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24101 5' -63.9 NC_005262.1 + 41547 0.68 0.232527
Target:  5'- cGGCGUgauGCGCAggccggccggcGUGGGCGgCGCGGCc -3'
miRNA:   3'- uCCGCGag-CGCGU-----------CGUCCGC-GCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 26542 0.68 0.221257
Target:  5'- cGGCcguuGUUCGUGCGGUucacgcggaAGGCGCGUGuCg -3'
miRNA:   3'- uCCG----CGAGCGCGUCG---------UCCGCGCGCuG- -5'
24101 5' -63.9 NC_005262.1 + 3163 0.66 0.332871
Target:  5'- cGGUGCUCGcCGCucgcCAGcGUGCGCauGGCg -3'
miRNA:   3'- uCCGCGAGC-GCGuc--GUC-CGCGCG--CUG- -5'
24101 5' -63.9 NC_005262.1 + 23386 0.66 0.325286
Target:  5'- cAGGuCGCcgaCGCGCGGCuGaaucCGCGCGAa -3'
miRNA:   3'- -UCC-GCGa--GCGCGUCGuCc---GCGCGCUg -5'
24101 5' -63.9 NC_005262.1 + 13399 0.66 0.317831
Target:  5'- cGGCGCUgaucgcCGCGCGGUucGCGuCGCcACg -3'
miRNA:   3'- uCCGCGA------GCGCGUCGucCGC-GCGcUG- -5'
24101 5' -63.9 NC_005262.1 + 19380 0.66 0.317831
Target:  5'- gAGGuCGCcaUCGUGU-GC-GGCGCGCGGg -3'
miRNA:   3'- -UCC-GCG--AGCGCGuCGuCCGCGCGCUg -5'
24101 5' -63.9 NC_005262.1 + 27929 0.66 0.308331
Target:  5'- uAGGUGCgCGCGUcGCgcgcacaaacaucuGGGCGguCGCGGCg -3'
miRNA:   3'- -UCCGCGaGCGCGuCG--------------UCCGC--GCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 2983 0.66 0.303307
Target:  5'- cGGCGCaaacUCuGCGaCAGCGGaacgcgcaGCGUGUGACu -3'
miRNA:   3'- uCCGCG----AG-CGC-GUCGUC--------CGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 52218 0.67 0.269248
Target:  5'- cGaGCGCUgGcCGCcgccggcauAGCAGcGCGCGUGAUg -3'
miRNA:   3'- uC-CGCGAgC-GCG---------UCGUC-CGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 46233 0.67 0.256513
Target:  5'- cGGC-UUCGCGCGccgccGCGGcugccgccucGCGCGCGACc -3'
miRNA:   3'- uCCGcGAGCGCGU-----CGUC----------CGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 46899 0.73 0.092775
Target:  5'- cGGUGCggGCGguGCGguguggugcggcccGGCGCGCGGCc -3'
miRNA:   3'- uCCGCGagCGCguCGU--------------CCGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 50651 0.73 0.096082
Target:  5'- -uGUGC-CGCGCAGC--GCGCGCGGCg -3'
miRNA:   3'- ucCGCGaGCGCGUCGucCGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 53245 0.68 0.215799
Target:  5'- cGGCug-CGCGCGGCcGGuCGCGuCGGCa -3'
miRNA:   3'- uCCGcgaGCGCGUCGuCC-GCGC-GCUG- -5'
24101 5' -63.9 NC_005262.1 + 40508 0.69 0.205229
Target:  5'- uGGCGaaCGaCGgGGCGGGCGUgaagaaGCGACg -3'
miRNA:   3'- uCCGCgaGC-GCgUCGUCCGCG------CGCUG- -5'
24101 5' -63.9 NC_005262.1 + 3315 0.7 0.177993
Target:  5'- cGGCGUcucgcccugaUCGCGCAGCgucauguagagcgacAGGCGCaGCG-Cg -3'
miRNA:   3'- uCCGCG----------AGCGCGUCG---------------UCCGCG-CGCuG- -5'
24101 5' -63.9 NC_005262.1 + 52585 0.7 0.171704
Target:  5'- cGGCGCggcucUCGaucuuGCAGguGGCGCGC-ACg -3'
miRNA:   3'- uCCGCG-----AGCg----CGUCguCCGCGCGcUG- -5'
24101 5' -63.9 NC_005262.1 + 17752 0.71 0.146568
Target:  5'- cGGCGacgCGCGCaugacuucguaguAGCGcGGCaGCGCGACg -3'
miRNA:   3'- uCCGCga-GCGCG-------------UCGU-CCG-CGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 14046 0.71 0.139451
Target:  5'- cGGGCGCggGCGCcGCcGGCGUcgguGCGGCu -3'
miRNA:   3'- -UCCGCGagCGCGuCGuCCGCG----CGCUG- -5'
24101 5' -63.9 NC_005262.1 + 25976 0.71 0.128857
Target:  5'- uGcCGCUCGCGCAGUAcacGGCGggcacguuCGCGACg -3'
miRNA:   3'- uCcGCGAGCGCGUCGU---CCGC--------GCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 45398 0.73 0.106971
Target:  5'- gAGGCGCUCGgaagcCGguGCGGGuCGUGCaACg -3'
miRNA:   3'- -UCCGCGAGC-----GCguCGUCC-GCGCGcUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.