miRNA display CGI


Results 21 - 40 of 199 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24101 5' -63.9 NC_005262.1 + 21343 0.66 0.317831
Target:  5'- gAGGCGaUCGagGCGGCcaAGGCcGCGCGcaGCg -3'
miRNA:   3'- -UCCGCgAGCg-CGUCG--UCCG-CGCGC--UG- -5'
24101 5' -63.9 NC_005262.1 + 28285 0.66 0.317831
Target:  5'- cGGCGCUgucgccuaUGCGC-GCAaGCGCGUGcGCa -3'
miRNA:   3'- uCCGCGA--------GCGCGuCGUcCGCGCGC-UG- -5'
24101 5' -63.9 NC_005262.1 + 34993 0.66 0.317831
Target:  5'- cAGGCaGC-CGgGCAGCAG-CGCG-GGCc -3'
miRNA:   3'- -UCCG-CGaGCgCGUCGUCcGCGCgCUG- -5'
24101 5' -63.9 NC_005262.1 + 19380 0.66 0.317831
Target:  5'- gAGGuCGCcaUCGUGU-GC-GGCGCGCGGg -3'
miRNA:   3'- -UCC-GCG--AGCGCGuCGuCCGCGCGCUg -5'
24101 5' -63.9 NC_005262.1 + 57465 0.66 0.317831
Target:  5'- -cGCGaCUaCaaGCGGCGGGCGC-CGACg -3'
miRNA:   3'- ucCGC-GA-GcgCGUCGUCCGCGcGCUG- -5'
24101 5' -63.9 NC_005262.1 + 52733 0.66 0.317831
Target:  5'- uGGcCGCUCGgGCu-CAGGCGacgcuGCGGCc -3'
miRNA:   3'- uCC-GCGAGCgCGucGUCCGCg----CGCUG- -5'
24101 5' -63.9 NC_005262.1 + 30465 0.66 0.317831
Target:  5'- cGGUGC-CGCGCAGCGacgcaguuGCGUcCGACu -3'
miRNA:   3'- uCCGCGaGCGCGUCGUc-------CGCGcGCUG- -5'
24101 5' -63.9 NC_005262.1 + 27513 0.66 0.317831
Target:  5'- gAGGUGUUCGCGUcGCc-GCGCGCc-- -3'
miRNA:   3'- -UCCGCGAGCGCGuCGucCGCGCGcug -5'
24101 5' -63.9 NC_005262.1 + 39616 0.66 0.317831
Target:  5'- cGGGCGUgaacUCGC-CGgggaacguGCAGGCGUGCGcCu -3'
miRNA:   3'- -UCCGCG----AGCGcGU--------CGUCCGCGCGCuG- -5'
24101 5' -63.9 NC_005262.1 + 9935 0.66 0.310504
Target:  5'- cGGCGCaaaGCGCAGC--GCGCuGaCGGCg -3'
miRNA:   3'- uCCGCGag-CGCGUCGucCGCG-C-GCUG- -5'
24101 5' -63.9 NC_005262.1 + 40139 0.66 0.310504
Target:  5'- cGaCGCUCGCGCugcaacccGGaCAGG-GUGCGGCg -3'
miRNA:   3'- uCcGCGAGCGCG--------UC-GUCCgCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 50876 0.66 0.308331
Target:  5'- cAGcGCGC-CGCGCagguugucguguccAGCAGGC-CGgGGCu -3'
miRNA:   3'- -UC-CGCGaGCGCG--------------UCGUCCGcGCgCUG- -5'
24101 5' -63.9 NC_005262.1 + 27929 0.66 0.308331
Target:  5'- uAGGUGCgCGCGUcGCgcgcacaaacaucuGGGCGguCGCGGCg -3'
miRNA:   3'- -UCCGCGaGCGCGuCG--------------UCCGC--GCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 26046 0.66 0.303307
Target:  5'- cGcCGCggCGCGCaAGCAGGgGCGCa-- -3'
miRNA:   3'- uCcGCGa-GCGCG-UCGUCCgCGCGcug -5'
24101 5' -63.9 NC_005262.1 + 49373 0.66 0.303307
Target:  5'- cGGCGacgCGCGCGuucaucaccGCGGGCGuCGCaACu -3'
miRNA:   3'- uCCGCga-GCGCGU---------CGUCCGC-GCGcUG- -5'
24101 5' -63.9 NC_005262.1 + 39337 0.66 0.303307
Target:  5'- -cGUGC-CGUGCAGCgccaucgaucGGGCGUGaCGGCu -3'
miRNA:   3'- ucCGCGaGCGCGUCG----------UCCGCGC-GCUG- -5'
24101 5' -63.9 NC_005262.1 + 13008 0.66 0.303307
Target:  5'- uGGGUGUaCGCGCAGgA-GCGCGCcaagGGCu -3'
miRNA:   3'- -UCCGCGaGCGCGUCgUcCGCGCG----CUG- -5'
24101 5' -63.9 NC_005262.1 + 2983 0.66 0.303307
Target:  5'- cGGCGCaaacUCuGCGaCAGCGGaacgcgcaGCGUGUGACu -3'
miRNA:   3'- uCCGCG----AG-CGC-GUCGUC--------CGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 8146 0.66 0.303307
Target:  5'- cGGCGUgccgGaCGCGGCcacGaGCGCGCGGCc -3'
miRNA:   3'- uCCGCGag--C-GCGUCGu--C-CGCGCGCUG- -5'
24101 5' -63.9 NC_005262.1 + 58934 0.66 0.296239
Target:  5'- uGGCGCgCGCuucuCGGUcGGCGCGCaGCa -3'
miRNA:   3'- uCCGCGaGCGc---GUCGuCCGCGCGcUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.