miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24102 3' -56.8 NC_005262.1 + 1989 0.66 0.674604
Target:  5'- cUCGAGCGCGaggcAUGcGCCGCGcAGGc -3'
miRNA:   3'- cAGUUCGCGCgu--UACcCGGUGC-UCCu -5'
24102 3' -56.8 NC_005262.1 + 59964 0.66 0.667027
Target:  5'- cGUCAcgcgcGGgGCGCucggcaccuuccuccGGGCCGuCGAGGAu -3'
miRNA:   3'- -CAGU-----UCgCGCGuua------------CCCGGU-GCUCCU- -5'
24102 3' -56.8 NC_005262.1 + 8254 0.66 0.652915
Target:  5'- -cCGAGCGCGCGAaagcaGcGGCC--GAGGAa -3'
miRNA:   3'- caGUUCGCGCGUUa----C-CCGGugCUCCU- -5'
24102 3' -56.8 NC_005262.1 + 8038 0.66 0.652915
Target:  5'- cGUCAggacugacgcAGCGCGCGuucUGGGUgaGCGuGGGg -3'
miRNA:   3'- -CAGU----------UCGCGCGUu--ACCCGg-UGCuCCU- -5'
24102 3' -56.8 NC_005262.1 + 57308 0.66 0.652915
Target:  5'- cGUCGAGCGgguUGCGAacuucUGGGCcCGCGucGAu -3'
miRNA:   3'- -CAGUUCGC---GCGUU-----ACCCG-GUGCucCU- -5'
24102 3' -56.8 NC_005262.1 + 28928 0.66 0.652915
Target:  5'- -gCGAGCGCGCcccacaGAUgaGGGUCaugugcucgcgcGCGAGGAa -3'
miRNA:   3'- caGUUCGCGCG------UUA--CCCGG------------UGCUCCU- -5'
24102 3' -56.8 NC_005262.1 + 47000 0.66 0.642037
Target:  5'- ---uGGCGCGCGAcgcagaUGGGCgAcauCGAGGGc -3'
miRNA:   3'- caguUCGCGCGUU------ACCCGgU---GCUCCU- -5'
24102 3' -56.8 NC_005262.1 + 56546 0.66 0.620264
Target:  5'- cGUCGAGCaGCGCGAgGGGCgcaucaucCGCcAGGGc -3'
miRNA:   3'- -CAGUUCG-CGCGUUaCCCG--------GUGcUCCU- -5'
24102 3' -56.8 NC_005262.1 + 13683 0.66 0.620264
Target:  5'- aUCAcGCGCGCGGUGcuGGCgCGUGAGGu -3'
miRNA:   3'- cAGUuCGCGCGUUAC--CCG-GUGCUCCu -5'
24102 3' -56.8 NC_005262.1 + 58693 0.66 0.620264
Target:  5'- -gCGAGCGCGCAAcaagcUGGcggcauGCC-CGAGGc -3'
miRNA:   3'- caGUUCGCGCGUU-----ACC------CGGuGCUCCu -5'
24102 3' -56.8 NC_005262.1 + 58081 0.66 0.620264
Target:  5'- gGUCAAgGUGCGCGAcGGcaacaaccGCCugauCGAGGAa -3'
miRNA:   3'- -CAGUU-CGCGCGUUaCC--------CGGu---GCUCCU- -5'
24102 3' -56.8 NC_005262.1 + 17188 0.67 0.609388
Target:  5'- cGUCGGGCGgGaucuGUGGcgucuGCgGCGAGGAc -3'
miRNA:   3'- -CAGUUCGCgCgu--UACC-----CGgUGCUCCU- -5'
24102 3' -56.8 NC_005262.1 + 3971 0.67 0.608302
Target:  5'- aGUCGAGCaccugauacgugGCGCcugcGGGCCGgugcccuCGAGGAa -3'
miRNA:   3'- -CAGUUCG------------CGCGuua-CCCGGU-------GCUCCU- -5'
24102 3' -56.8 NC_005262.1 + 49499 0.67 0.607215
Target:  5'- -gCGGuGCGCGCAGcgcgaucgccgaGGGCCugcuCGAGGAg -3'
miRNA:   3'- caGUU-CGCGCGUUa-----------CCCGGu---GCUCCU- -5'
24102 3' -56.8 NC_005262.1 + 11479 0.67 0.576911
Target:  5'- ----cGCGCGCGAgcacaUGGGCCGCGucGc -3'
miRNA:   3'- caguuCGCGCGUU-----ACCCGGUGCucCu -5'
24102 3' -56.8 NC_005262.1 + 49228 0.67 0.555469
Target:  5'- cUCGgcGGCGCGCAGUccGCgCGCGAGGu -3'
miRNA:   3'- cAGU--UCGCGCGUUAccCG-GUGCUCCu -5'
24102 3' -56.8 NC_005262.1 + 35645 0.68 0.544833
Target:  5'- ---cGGCGgGCGAUGGGCUACucGGu -3'
miRNA:   3'- caguUCGCgCGUUACCCGGUGcuCCu -5'
24102 3' -56.8 NC_005262.1 + 15901 0.68 0.538483
Target:  5'- -gCGuGCGCGCGacGUGGcGCCgcgaugcgccgcagaGCGAGGAg -3'
miRNA:   3'- caGUuCGCGCGU--UACC-CGG---------------UGCUCCU- -5'
24102 3' -56.8 NC_005262.1 + 13022 0.68 0.534264
Target:  5'- --gGAGCGCGCcaaGGGCUACGcGGu -3'
miRNA:   3'- cagUUCGCGCGuuaCCCGGUGCuCCu -5'
24102 3' -56.8 NC_005262.1 + 62749 0.68 0.534264
Target:  5'- gGUC-AGCGcCGCAgcauucggcacGUGGGUCgccaGCGAGGGa -3'
miRNA:   3'- -CAGuUCGC-GCGU-----------UACCCGG----UGCUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.