miRNA display CGI


Results 41 - 57 of 57 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24102 5' -54.8 NC_005262.1 + 37855 0.74 0.339169
Target:  5'- -uUCCUcguugCCGGAaaagucgGCGUCGCGCGUGGCg -3'
miRNA:   3'- guAGGA-----GGUCU-------UGUAGCGCGCGCUGa -5'
24102 5' -54.8 NC_005262.1 + 3718 0.75 0.272286
Target:  5'- --cCCgUCAGcGCGUCGCGCGCGGCg -3'
miRNA:   3'- guaGGaGGUCuUGUAGCGCGCGCUGa -5'
24102 5' -54.8 NC_005262.1 + 29992 0.68 0.6594
Target:  5'- uCGUCCUggAGGACGUUGCccGCGCGAg- -3'
miRNA:   3'- -GUAGGAggUCUUGUAGCG--CGCGCUga -5'
24102 5' -54.8 NC_005262.1 + 6226 0.68 0.670305
Target:  5'- uCAUCCggagCCGcgucGAACGUCucgauGCGCGUGACc -3'
miRNA:   3'- -GUAGGa---GGU----CUUGUAG-----CGCGCGCUGa -5'
24102 5' -54.8 NC_005262.1 + 5895 0.68 0.68009
Target:  5'- uGUCCUUCGGGuuCGUUGCGCGaucuucaCGACg -3'
miRNA:   3'- gUAGGAGGUCUu-GUAGCGCGC-------GCUGa -5'
24102 5' -54.8 NC_005262.1 + 9388 0.66 0.785498
Target:  5'- --gCCUCCGcGAGC-UUGCGCaCGACg -3'
miRNA:   3'- guaGGAGGU-CUUGuAGCGCGcGCUGa -5'
24102 5' -54.8 NC_005262.1 + 17070 0.66 0.776589
Target:  5'- gAUCCggucgugCCGGAuuGCGccggcuuguccacugCGCGCGCGGCg -3'
miRNA:   3'- gUAGGa------GGUCU--UGUa--------------GCGCGCGCUGa -5'
24102 5' -54.8 NC_005262.1 + 15070 0.66 0.775591
Target:  5'- aCAUCCgacacguugucCCAGAACGaCGCgucuuucugcgGCGCGGCg -3'
miRNA:   3'- -GUAGGa----------GGUCUUGUaGCG-----------CGCGCUGa -5'
24102 5' -54.8 NC_005262.1 + 8204 0.66 0.765539
Target:  5'- --aCCUUCAuGAACAgguccaUCGCGCGCuGCg -3'
miRNA:   3'- guaGGAGGU-CUUGU------AGCGCGCGcUGa -5'
24102 5' -54.8 NC_005262.1 + 33869 0.66 0.75535
Target:  5'- uCGUCCUUCAGGcUAUCGCcgaGCGUGGu- -3'
miRNA:   3'- -GUAGGAGGUCUuGUAGCG---CGCGCUga -5'
24102 5' -54.8 NC_005262.1 + 32013 0.66 0.745037
Target:  5'- aGUCa-CCGaGACgAUCGCGCGCGAUg -3'
miRNA:   3'- gUAGgaGGUcUUG-UAGCGCGCGCUGa -5'
24102 5' -54.8 NC_005262.1 + 46735 0.67 0.73461
Target:  5'- --gCCUaUCGGcGCcgUGCGCGCGACg -3'
miRNA:   3'- guaGGA-GGUCuUGuaGCGCGCGCUGa -5'
24102 5' -54.8 NC_005262.1 + 26434 0.67 0.710261
Target:  5'- uCGUCCUuCCAGAaugaccagaagugcACGUCGaaGCGCGAa- -3'
miRNA:   3'- -GUAGGA-GGUCU--------------UGUAGCg-CGCGCUga -5'
24102 5' -54.8 NC_005262.1 + 51760 0.67 0.702765
Target:  5'- gGUCUgccaugCCGGGGa--CGCGCGCGACc -3'
miRNA:   3'- gUAGGa-----GGUCUUguaGCGCGCGCUGa -5'
24102 5' -54.8 NC_005262.1 + 47464 0.67 0.691998
Target:  5'- --gCCgagCCAGAGgAUCGCG-GCGAUg -3'
miRNA:   3'- guaGGa--GGUCUUgUAGCGCgCGCUGa -5'
24102 5' -54.8 NC_005262.1 + 14018 0.67 0.687675
Target:  5'- gCGUCCggcgcggcagcggCCGGAGCcUCGgGCGCGGg- -3'
miRNA:   3'- -GUAGGa------------GGUCUUGuAGCgCGCGCUga -5'
24102 5' -54.8 NC_005262.1 + 19169 0.66 0.795246
Target:  5'- -cUCCUCCcauGCcUUGCGCGCGGg- -3'
miRNA:   3'- guAGGAGGucuUGuAGCGCGCGCUga -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.