Results 21 - 40 of 57 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
24102 | 5' | -54.8 | NC_005262.1 | + | 46983 | 0.67 | 0.713463 |
Target: 5'- --gCCUgUGGGcgaagGCAUgGCGCGCGACg -3' miRNA: 3'- guaGGAgGUCU-----UGUAgCGCGCGCUGa -5' |
|||||||
24102 | 5' | -54.8 | NC_005262.1 | + | 26434 | 0.67 | 0.710261 |
Target: 5'- uCGUCCUuCCAGAaugaccagaagugcACGUCGaaGCGCGAa- -3' miRNA: 3'- -GUAGGA-GGUCU--------------UGUAGCg-CGCGCUga -5' |
|||||||
24102 | 5' | -54.8 | NC_005262.1 | + | 51760 | 0.67 | 0.702765 |
Target: 5'- gGUCUgccaugCCGGGGa--CGCGCGCGACc -3' miRNA: 3'- gUAGGa-----GGUCUUguaGCGCGCGCUGa -5' |
|||||||
24102 | 5' | -54.8 | NC_005262.1 | + | 47464 | 0.67 | 0.691998 |
Target: 5'- --gCCgagCCAGAGgAUCGCG-GCGAUg -3' miRNA: 3'- guaGGa--GGUCUUgUAGCGCgCGCUGa -5' |
|||||||
24102 | 5' | -54.8 | NC_005262.1 | + | 59998 | 0.67 | 0.691998 |
Target: 5'- gAUCCUCgAGAugAUgCGCGgCGUGAa- -3' miRNA: 3'- gUAGGAGgUCUugUA-GCGC-GCGCUga -5' |
|||||||
24102 | 5' | -54.8 | NC_005262.1 | + | 32903 | 0.67 | 0.691998 |
Target: 5'- --gCCaagCCGGcGGCGUCGCacGCGCGACg -3' miRNA: 3'- guaGGa--GGUC-UUGUAGCG--CGCGCUGa -5' |
|||||||
24102 | 5' | -54.8 | NC_005262.1 | + | 57754 | 0.67 | 0.691998 |
Target: 5'- ---gCUCgAGGGCAUUGCGCGCaauGGCg -3' miRNA: 3'- guagGAGgUCUUGUAGCGCGCG---CUGa -5' |
|||||||
24102 | 5' | -54.8 | NC_005262.1 | + | 14018 | 0.67 | 0.687675 |
Target: 5'- gCGUCCggcgcggcagcggCCGGAGCcUCGgGCGCGGg- -3' miRNA: 3'- -GUAGGa------------GGUCUUGuAGCgCGCGCUga -5' |
|||||||
24102 | 5' | -54.8 | NC_005262.1 | + | 5895 | 0.68 | 0.68009 |
Target: 5'- uGUCCUUCGGGuuCGUUGCGCGaucuucaCGACg -3' miRNA: 3'- gUAGGAGGUCUu-GUAGCGCGC-------GCUGa -5' |
|||||||
24102 | 5' | -54.8 | NC_005262.1 | + | 6226 | 0.68 | 0.670305 |
Target: 5'- uCAUCCggagCCGcgucGAACGUCucgauGCGCGUGACc -3' miRNA: 3'- -GUAGGa---GGU----CUUGUAG-----CGCGCGCUGa -5' |
|||||||
24102 | 5' | -54.8 | NC_005262.1 | + | 59377 | 0.68 | 0.670305 |
Target: 5'- cCGagCUCCAGGcgcucgcgcaGCAg-GCGCGCGACa -3' miRNA: 3'- -GUagGAGGUCU----------UGUagCGCGCGCUGa -5' |
|||||||
24102 | 5' | -54.8 | NC_005262.1 | + | 29992 | 0.68 | 0.6594 |
Target: 5'- uCGUCCUggAGGACGUUGCccGCGCGAg- -3' miRNA: 3'- -GUAGGAggUCUUGUAGCG--CGCGCUga -5' |
|||||||
24102 | 5' | -54.8 | NC_005262.1 | + | 49489 | 0.68 | 0.64847 |
Target: 5'- gCAUUCUCCGGcgguGCG-CGCaGCGCGAUc -3' miRNA: 3'- -GUAGGAGGUCu---UGUaGCG-CGCGCUGa -5' |
|||||||
24102 | 5' | -54.8 | NC_005262.1 | + | 44144 | 0.68 | 0.626575 |
Target: 5'- -uUCCggCCGG-ACG-CGCGCGCGAUc -3' miRNA: 3'- guAGGa-GGUCuUGUaGCGCGCGCUGa -5' |
|||||||
24102 | 5' | -54.8 | NC_005262.1 | + | 45069 | 0.68 | 0.626575 |
Target: 5'- ---aUUCCAGGGCAUcaCGCGCGCG-Ca -3' miRNA: 3'- guagGAGGUCUUGUA--GCGCGCGCuGa -5' |
|||||||
24102 | 5' | -54.8 | NC_005262.1 | + | 53442 | 0.69 | 0.604699 |
Target: 5'- -uUCCUCCAGAAg--CGCGgCGcCGGCg -3' miRNA: 3'- guAGGAGGUCUUguaGCGC-GC-GCUGa -5' |
|||||||
24102 | 5' | -54.8 | NC_005262.1 | + | 12722 | 0.69 | 0.604699 |
Target: 5'- gCGUCCcgCCGGAGCAcCGCGUcaucggucaGUGGCUg -3' miRNA: 3'- -GUAGGa-GGUCUUGUaGCGCG---------CGCUGA- -5' |
|||||||
24102 | 5' | -54.8 | NC_005262.1 | + | 21744 | 0.69 | 0.593792 |
Target: 5'- ---gCUCaCGGAAgAUCGCGCaGCGGCa -3' miRNA: 3'- guagGAG-GUCUUgUAGCGCG-CGCUGa -5' |
|||||||
24102 | 5' | -54.8 | NC_005262.1 | + | 19949 | 0.69 | 0.582917 |
Target: 5'- gGUCCUgCCGGccacCGcCGCGCGCGGCc -3' miRNA: 3'- gUAGGA-GGUCuu--GUaGCGCGCGCUGa -5' |
|||||||
24102 | 5' | -54.8 | NC_005262.1 | + | 25530 | 0.69 | 0.582917 |
Target: 5'- gCAUCCgcgUCGcGACGUcCGUGCGCGGCg -3' miRNA: 3'- -GUAGGa--GGUcUUGUA-GCGCGCGCUGa -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home