miRNA display CGI


Results 21 - 40 of 40 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24103 3' -57.3 NC_005262.1 + 2041 0.68 0.499925
Target:  5'- -uCGACGGGGCGCguaGCG-AGCAu-- -3'
miRNA:   3'- uuGCUGCUCCGCGag-CGCuUCGUcua -5'
24103 3' -57.3 NC_005262.1 + 29454 0.68 0.479504
Target:  5'- uGCGGCaGAGGCGCaggUCGCcGAGGCGa-- -3'
miRNA:   3'- uUGCUG-CUCCGCG---AGCG-CUUCGUcua -5'
24103 3' -57.3 NC_005262.1 + 60977 0.68 0.469447
Target:  5'- aAACGAgguCGAGGCGCagGUGGAGCGc-- -3'
miRNA:   3'- -UUGCU---GCUCCGCGagCGCUUCGUcua -5'
24103 3' -57.3 NC_005262.1 + 17525 0.68 0.468448
Target:  5'- uGACGACGAugcacgggcacgcGGuCGCgCGCGAGGCGGc- -3'
miRNA:   3'- -UUGCUGCU-------------CC-GCGaGCGCUUCGUCua -5'
24103 3' -57.3 NC_005262.1 + 50405 0.68 0.449665
Target:  5'- cGCGGCGAucaGCGC-CGCGGAGCGcGAg -3'
miRNA:   3'- uUGCUGCUc--CGCGaGCGCUUCGU-CUa -5'
24103 3' -57.3 NC_005262.1 + 53904 0.69 0.439948
Target:  5'- cGugGACGGGucuGCGCgacgCGCuGAAGCAGGc -3'
miRNA:   3'- -UugCUGCUC---CGCGa---GCG-CUUCGUCUa -5'
24103 3' -57.3 NC_005262.1 + 34877 0.69 0.411534
Target:  5'- -uCGugGGGcGCGCUCGCG-AGCAu-- -3'
miRNA:   3'- uuGCugCUC-CGCGAGCGCuUCGUcua -5'
24103 3' -57.3 NC_005262.1 + 40512 0.69 0.411534
Target:  5'- gAACGACGGGGCGggCGUGAAGaagcGAc -3'
miRNA:   3'- -UUGCUGCUCCGCgaGCGCUUCgu--CUa -5'
24103 3' -57.3 NC_005262.1 + 32289 0.69 0.402318
Target:  5'- uACGGCGcGGGCGCgaaCGuCGAGGCAGc- -3'
miRNA:   3'- uUGCUGC-UCCGCGa--GC-GCUUCGUCua -5'
24103 3' -57.3 NC_005262.1 + 46798 0.69 0.393234
Target:  5'- cACGACGAGcgcGCGCUCggccgGCGGcAGCAGGg -3'
miRNA:   3'- uUGCUGCUC---CGCGAG-----CGCU-UCGUCUa -5'
24103 3' -57.3 NC_005262.1 + 36130 0.7 0.365077
Target:  5'- uACGGCGAGGCGagcaccgccagCGCGAucgaccagcucgAGCAGAUc -3'
miRNA:   3'- uUGCUGCUCCGCga---------GCGCU------------UCGUCUA- -5'
24103 3' -57.3 NC_005262.1 + 54469 0.72 0.280676
Target:  5'- cAACGuCGAGGCGCugcUCGCGguGCAGc- -3'
miRNA:   3'- -UUGCuGCUCCGCG---AGCGCuuCGUCua -5'
24103 3' -57.3 NC_005262.1 + 59496 0.73 0.247171
Target:  5'- cGACGAUGAGGgGCgCGUGAuugaGGCGGGUg -3'
miRNA:   3'- -UUGCUGCUCCgCGaGCGCU----UCGUCUA- -5'
24103 3' -57.3 NC_005262.1 + 8269 0.73 0.246536
Target:  5'- cAGCGGcCGAGGaagcugcccgcguCGCUCGCGAGGCGGc- -3'
miRNA:   3'- -UUGCU-GCUCC-------------GCGAGCGCUUCGUCua -5'
24103 3' -57.3 NC_005262.1 + 25442 0.73 0.240881
Target:  5'- uACGAcaaccugccCGAGGCGCUgCGCGAGGC-GAUg -3'
miRNA:   3'- uUGCU---------GCUCCGCGA-GCGCUUCGuCUA- -5'
24103 3' -57.3 NC_005262.1 + 59372 0.73 0.228701
Target:  5'- cAACGcCGAgcuccaGGCGCUCGCGcAGCAGGc -3'
miRNA:   3'- -UUGCuGCU------CCGCGAGCGCuUCGUCUa -5'
24103 3' -57.3 NC_005262.1 + 15908 0.75 0.190119
Target:  5'- cGCGACGuGGCGC-CGCGAugcgccGCAGAg -3'
miRNA:   3'- uUGCUGCuCCGCGaGCGCUu-----CGUCUa -5'
24103 3' -57.3 NC_005262.1 + 45151 0.75 0.170734
Target:  5'- cGCGACaAGGCGCUCGCGcugcguGCGGAc -3'
miRNA:   3'- uUGCUGcUCCGCGAGCGCuu----CGUCUa -5'
24103 3' -57.3 NC_005262.1 + 33528 0.77 0.133458
Target:  5'- gGACGACGAGGCGaUCGCGAccaAGaCGGAa -3'
miRNA:   3'- -UUGCUGCUCCGCgAGCGCU---UC-GUCUa -5'
24103 3' -57.3 NC_005262.1 + 59941 1.03 0.001753
Target:  5'- cAACGACGAGGCGCUCGCGAAGCAGAUu -3'
miRNA:   3'- -UUGCUGCUCCGCGAGCGCUUCGUCUA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.