Results 101 - 104 of 104 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
24103 | 5' | -56.6 | NC_005262.1 | + | 37931 | 0.76 | 0.202244 |
Target: 5'- aCGAUU-GGCGCGCAUGgACCgCGAcgCCa -3' miRNA: 3'- -GCUAGuCCGCGCGUACgUGG-GCUa-GG- -5' |
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24103 | 5' | -56.6 | NC_005262.1 | + | 45640 | 0.78 | 0.143188 |
Target: 5'- gCGAUCAGGCGgGCAcGCGcuCCCGGUUg -3' miRNA: 3'- -GCUAGUCCGCgCGUaCGU--GGGCUAGg -5' |
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24103 | 5' | -56.6 | NC_005262.1 | + | 41111 | 0.82 | 0.080256 |
Target: 5'- gCGGUCgAGGCGCGUcUGCGCaCUGGUCCg -3' miRNA: 3'- -GCUAG-UCCGCGCGuACGUG-GGCUAGG- -5' |
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24103 | 5' | -56.6 | NC_005262.1 | + | 59976 | 1.11 | 0.000654 |
Target: 5'- uCGAUCAGGCGCGCAUGCACCCGAUCCu -3' miRNA: 3'- -GCUAGUCCGCGCGUACGUGGGCUAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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