miRNA display CGI


Results 21 - 40 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24103 5' -56.6 NC_005262.1 + 49750 0.71 0.391871
Target:  5'- cCGAcgCcGGCgGCGCccGCGCCCGAggcUCCg -3'
miRNA:   3'- -GCUa-GuCCG-CGCGuaCGUGGGCU---AGG- -5'
24103 5' -56.6 NC_005262.1 + 8956 0.7 0.437643
Target:  5'- cCGGUC-GGCGCGC-UGCgugUCGGUCCa -3'
miRNA:   3'- -GCUAGuCCGCGCGuACGug-GGCUAGG- -5'
24103 5' -56.6 NC_005262.1 + 18671 0.7 0.476381
Target:  5'- aCGuUCuGGCGCGCGguguucgcgGCACCCG--CCg -3'
miRNA:   3'- -GCuAGuCCGCGCGUa--------CGUGGGCuaGG- -5'
24103 5' -56.6 NC_005262.1 + 62109 0.7 0.437643
Target:  5'- uGAccUCaAGGCGCGCAUGgACugggCCGaAUCCa -3'
miRNA:   3'- gCU--AG-UCCGCGCGUACgUG----GGC-UAGG- -5'
24103 5' -56.6 NC_005262.1 + 47801 0.7 0.466533
Target:  5'- -cGUCGGuGcCGCGC-UGCACgCCGAUCUc -3'
miRNA:   3'- gcUAGUC-C-GCGCGuACGUG-GGCUAGG- -5'
24103 5' -56.6 NC_005262.1 + 40344 0.7 0.437643
Target:  5'- ---cCAGGcCGCGCAUGCGCCa-GUCg -3'
miRNA:   3'- gcuaGUCC-GCGCGUACGUGGgcUAGg -5'
24103 5' -56.6 NC_005262.1 + 33890 0.7 0.44716
Target:  5'- aCGAUCGuGCGUcgGCcgGCgGCCCGAUCg -3'
miRNA:   3'- -GCUAGUcCGCG--CGuaCG-UGGGCUAGg -5'
24103 5' -56.6 NC_005262.1 + 51679 0.7 0.455823
Target:  5'- gCGAUCugcucGCGCGCAcggcggcgcugauUGCGCCCGAa-- -3'
miRNA:   3'- -GCUAGuc---CGCGCGU-------------ACGUGGGCUagg -5'
24103 5' -56.6 NC_005262.1 + 53368 0.7 0.466533
Target:  5'- uGAUC-GGCGC-CAUGCGCCUG--CCg -3'
miRNA:   3'- gCUAGuCCGCGcGUACGUGGGCuaGG- -5'
24103 5' -56.6 NC_005262.1 + 3632 0.7 0.476381
Target:  5'- aGGUCcaucggcuGGGCGCGCA-GCuucuCCCGGUUg -3'
miRNA:   3'- gCUAG--------UCCGCGCGUaCGu---GGGCUAGg -5'
24103 5' -56.6 NC_005262.1 + 58080 0.69 0.526023
Target:  5'- aGGUCaAGGUGCGCGacgGCaacaaccGCCUGAUCg -3'
miRNA:   3'- gCUAG-UCCGCGCGUa--CG-------UGGGCUAGg -5'
24103 5' -56.6 NC_005262.1 + 11838 0.69 0.527057
Target:  5'- uCGAgcgCAGGCGCGCGcgagcgGCcuccACCUuGUCCg -3'
miRNA:   3'- -GCUa--GUCCGCGCGUa-----CG----UGGGcUAGG- -5'
24103 5' -56.6 NC_005262.1 + 51959 0.69 0.50652
Target:  5'- cCGcUCGcGCGCGCcUGCGCUCGAaacugUCCg -3'
miRNA:   3'- -GCuAGUcCGCGCGuACGUGGGCU-----AGG- -5'
24103 5' -56.6 NC_005262.1 + 8107 0.69 0.495371
Target:  5'- aGGUCGGGaaGCGCAagaGCAUcccgaagCCGAUCCg -3'
miRNA:   3'- gCUAGUCCg-CGCGUa--CGUG-------GGCUAGG- -5'
24103 5' -56.6 NC_005262.1 + 26883 0.69 0.50652
Target:  5'- aCGAUCGagugggccGGCGCGUccGUugUCGAUCa -3'
miRNA:   3'- -GCUAGU--------CCGCGCGuaCGugGGCUAGg -5'
24103 5' -56.6 NC_005262.1 + 37104 0.69 0.496379
Target:  5'- cCGAUCGGGCcgGCcacgGCAcUGCACgUUGAUCCa -3'
miRNA:   3'- -GCUAGUCCG--CG----CGU-ACGUG-GGCUAGG- -5'
24103 5' -56.6 NC_005262.1 + 49340 0.69 0.50652
Target:  5'- aCGAgCAGGCGCGCGccGCGCUCGc--- -3'
miRNA:   3'- -GCUaGUCCGCGCGUa-CGUGGGCuagg -5'
24103 5' -56.6 NC_005262.1 + 62708 0.69 0.516748
Target:  5'- aCGAUgGGuaauCGCGCAcGCACCCuGAUCg -3'
miRNA:   3'- -GCUAgUCc---GCGCGUaCGUGGG-CUAGg -5'
24103 5' -56.6 NC_005262.1 + 14520 0.69 0.520862
Target:  5'- gCGAUCGGcaacagcauggcaguGcCGUGCAUGCGCUgGAUCg -3'
miRNA:   3'- -GCUAGUC---------------C-GCGCGUACGUGGgCUAGg -5'
24103 5' -56.6 NC_005262.1 + 8952 0.69 0.537443
Target:  5'- uCGcgCGGGCGaCGCAcucCACCC-AUCCg -3'
miRNA:   3'- -GCuaGUCCGC-GCGUac-GUGGGcUAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.