miRNA display CGI


Results 61 - 80 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
24103 5' -56.6 NC_005262.1 + 13533 0.67 0.622444
Target:  5'- gGcgCGGGCGCGCccucguugcgGCGgUCGAUCUc -3'
miRNA:   3'- gCuaGUCCGCGCGua--------CGUgGGCUAGG- -5'
24103 5' -56.6 NC_005262.1 + 6464 0.67 0.65468
Target:  5'- cCGGgaacGGCGCGCccagacgGUugCCGAUCUg -3'
miRNA:   3'- -GCUagu-CCGCGCGua-----CGugGGCUAGG- -5'
24103 5' -56.6 NC_005262.1 + 18091 0.67 0.655753
Target:  5'- uCGAUCAcggccGGCugccggcccucgauGCGCAcgaagugcggcaccaUGCGCUCGAUCUg -3'
miRNA:   3'- -GCUAGU-----CCG--------------CGCGU---------------ACGUGGGCUAGG- -5'
24103 5' -56.6 NC_005262.1 + 10704 0.67 0.633194
Target:  5'- aGAUCgAGGCcgcGCGCAcGCGgCCGGcgcUCCc -3'
miRNA:   3'- gCUAG-UCCG---CGCGUaCGUgGGCU---AGG- -5'
24103 5' -56.6 NC_005262.1 + 6858 0.67 0.633194
Target:  5'- aCGAUCAGGC-CGUaguccucggcgAUGCcgGCCgCGAUCg -3'
miRNA:   3'- -GCUAGUCCGcGCG-----------UACG--UGG-GCUAGg -5'
24103 5' -56.6 NC_005262.1 + 49682 0.67 0.633194
Target:  5'- uGGUCGgcGGCGCGCGca-ACCUGAaCCg -3'
miRNA:   3'- gCUAGU--CCGCGCGUacgUGGGCUaGG- -5'
24103 5' -56.6 NC_005262.1 + 31739 0.67 0.643942
Target:  5'- gCGGUCGcauGuCGCGCAaGCGCaCGGUCCa -3'
miRNA:   3'- -GCUAGUc--C-GCGCGUaCGUGgGCUAGG- -5'
24103 5' -56.6 NC_005262.1 + 5188 0.67 0.642867
Target:  5'- gCGGgcgCGGGCGCgGCcgGCGCgaCCGAgggcguaUCCu -3'
miRNA:   3'- -GCUa--GUCCGCG-CGuaCGUG--GGCU-------AGG- -5'
24103 5' -56.6 NC_005262.1 + 34745 0.67 0.633194
Target:  5'- cCGAaCAcGGUGCGCGUcGUGCCgGcgCCg -3'
miRNA:   3'- -GCUaGU-CCGCGCGUA-CGUGGgCuaGG- -5'
24103 5' -56.6 NC_005262.1 + 34878 0.67 0.640718
Target:  5'- -cGUgGGGCGCGCucgcgagcauccucAUGCugCCGAagCa -3'
miRNA:   3'- gcUAgUCCGCGCG--------------UACGugGGCUagG- -5'
24103 5' -56.6 NC_005262.1 + 50254 0.67 0.640718
Target:  5'- aGAUCgaccgccgcaacgaGGGCGCGCccGCGCCggcCGAgCCc -3'
miRNA:   3'- gCUAG--------------UCCGCGCGuaCGUGG---GCUaGG- -5'
24103 5' -56.6 NC_005262.1 + 24727 0.66 0.71834
Target:  5'- uGAUCGcgcuGGCGCGCGcgaucggcgUGCGgCCGAa-- -3'
miRNA:   3'- gCUAGU----CCGCGCGU---------ACGUgGGCUagg -5'
24103 5' -56.6 NC_005262.1 + 6383 0.66 0.71834
Target:  5'- -aGUCAGGuCGaGCGUGCugCCG-UCg -3'
miRNA:   3'- gcUAGUCC-GCgCGUACGugGGCuAGg -5'
24103 5' -56.6 NC_005262.1 + 26174 0.66 0.71834
Target:  5'- aCGAgu-GGCGCGCG---AUCCGAUUCa -3'
miRNA:   3'- -GCUaguCCGCGCGUacgUGGGCUAGG- -5'
24103 5' -56.6 NC_005262.1 + 32301 0.66 0.71834
Target:  5'- gCGAacgUCgAGGCaGCGCGUGCGCUguucaUGggCCg -3'
miRNA:   3'- -GCU---AG-UCCG-CGCGUACGUGG-----GCuaGG- -5'
24103 5' -56.6 NC_005262.1 + 32561 0.66 0.71834
Target:  5'- cCGAcUUGGGCGCGUcgaucgacagGCGCgCGAUCUu -3'
miRNA:   3'- -GCU-AGUCCGCGCGua--------CGUGgGCUAGG- -5'
24103 5' -56.6 NC_005262.1 + 10460 0.66 0.71834
Target:  5'- gCGGUCGgcgagguagcGGCGCGCGcgGuCGCUCGccuuGUCCa -3'
miRNA:   3'- -GCUAGU----------CCGCGCGUa-C-GUGGGC----UAGG- -5'
24103 5' -56.6 NC_005262.1 + 47286 0.66 0.71834
Target:  5'- gGGUCAGccccaGCGCA-GCGCCCaGcgCCu -3'
miRNA:   3'- gCUAGUCcg---CGCGUaCGUGGG-CuaGG- -5'
24103 5' -56.6 NC_005262.1 + 54296 0.66 0.707873
Target:  5'- gCGGUCGGGC-CGCAaaucGCACCaguGGUgCg -3'
miRNA:   3'- -GCUAGUCCGcGCGUa---CGUGGg--CUAgG- -5'
24103 5' -56.6 NC_005262.1 + 30500 0.66 0.707873
Target:  5'- aCGGcuUC-GGCGCccgGCGUGCGCgCGAUgCg -3'
miRNA:   3'- -GCU--AGuCCGCG---CGUACGUGgGCUAgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.